Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: RNA recognition motif domain, eukaryote

Term: IPR003954  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene77 biogeco2 v2.0 714
• AutoFact: PRP38 multi-domain protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pre-mrna-splicing factor 38b 0.0
N-terminus
biog2_v2.0_unigene373 biogeco2 v2.0 1022
• AutoFact: DUF1777 multi-domain protein 1.0e-15
• FL-Next: sp=Splicing factor U2af large subunit B; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: splicing factor u2af large subunit b 0.0
C-terminus
biog2_v2.0_unigene1996 biogeco2 v2.0 621
• AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
• Blast2go: protein 0.0
Coding
biog2_v2.0_unigene2960 biogeco2 v2.0 534
• AutoFact: PRP38 multi-domain protein 0.0
• Blast2go: pre-mrna-splicing factor 38b 0.0
Putative coding
biog2_v2.0_unigene3149 biogeco2 v2.0 1174
• AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene7824 biogeco2 v2.0 621
• AutoFact: putative U2 snRNP auxiliary factor [Chenopodium rubrum] 1.00053e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u2 snrnp auxiliary small 0.0
C-terminus
biog2_v2.0_unigene9534 biogeco2 v2.0 362
• AutoFact: DNA-damage-repair/toleration protein DRT111 [Arabidopsis thaliana] sp|P42698.2|DR111_ARATH RecName: Full=DNA-damage-repair/toleration protein DRT111, chloroplastic; Flags: Precursor gb|AAF19751.1|AC009917_10 Strong similarity to gi|1169200 DNA-Damage-Repa 0.0
• FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna-damage-repair toleration protein drt111 0.0
Putative C-terminus
biog2_v2.0_unigene10680 biogeco2 v2.0 446
• AutoFact: DUF1777 multi-domain protein 1.0e-15
• Blast2go: splicing factor u2af large subunit b 0.0
unknown
biog2_v2.0_unigene13636 biogeco2 v2.0 310
• AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
• Blast2go: protein 0.0
unknown
biog2_v2.0_unigene17873 biogeco2 v2.0 424
• AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain