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Assembly Name: biogeco2 v2.0

Name: Pumilio RNA-binding repeat

Term: IPR001313  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene2032 biogeco2 v2.0 530
AutoFact: Nucleic acid binding NABP [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pumilio homolog 2-like 0.0
Complete
biog2_v2.0_unigene3301 biogeco2 v2.0 360
AutoFact: DUF632 domain containing protein 0.0
Blast2go: uncharacterized protein 0.0
unknown
biog2_v2.0_unigene4115 biogeco2 v2.0 421
AutoFact: transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb|AEC09638.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: amino acid transporter 0.0
C-terminus
biog2_v2.0_unigene4202 biogeco2 v2.0 1196
AutoFact: pumilio domain-containing protein PPD1 [Populus tremula x Populus tremuloides] 2.0e-38
FL-Next: sp=Pumilio homolog 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene4464 biogeco2 v2.0 272
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene7115 biogeco2 v2.0 604
AutoFact: Nucleic acid binding NABP [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pumilio homolog 2-like 0.0
Complete
biog2_v2.0_unigene7203 biogeco2 v2.0 650
AutoFact: Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SMX6_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene8733 biogeco2 v2.0 326
AutoFact: DUF659 multi-domain protein 0.0
FL-Next: tr=DNA binding protein; Cucumis melo subsp. melo. 0.0
Blast2go: uncharacterized protein loc100247282 0.0
Putative N-terminus
biog2_v2.0_unigene9487 biogeco2 v2.0 539
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
C-terminus
biog2_v2.0_unigene10520 biogeco2 v2.0 616
AutoFact: Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SMX6_PHYPA 0.0
FL-Next: Isoform 3 of Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene11167 biogeco2 v2.0 344
AutoFact: DUF632 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bzip transcription factor bzip133 0.0
Internal
biog2_v2.0_unigene11366 biogeco2 v2.0 441
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Putative pumilio homolog 7, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene13917 biogeco2 v2.0 243
AutoFact: Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SMX6_PHYPA 0.0
FL-Next: sp=Pumilio homolog 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene14628 biogeco2 v2.0 410
AutoFact: Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SMX6_PHYPA 0.0
FL-Next: sp=Pumilio homolog 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene15113 biogeco2 v2.0 412
AutoFact: Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] emb|CAL57619.1| Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] 1.99965e-42
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene15206 biogeco2 v2.0 415
AutoFact: Nucleic acid binding NABP [Medicago truncatula] 0.0
FL-Next: sp=Pumilio homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pumilio homolog 2-like 0.0
Internal
biog2_v2.0_unigene15257 biogeco2 v2.0 451
AutoFact: DUF632 domain containing protein 0.0
Blast2go: bzip transcription factor bzip133 0.0
unknown
biog2_v2.0_unigene16095 biogeco2 v2.0 373
AutoFact: DUF659 domain containing protein 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100793012 2.01032e-26
Putative C-terminus
biog2_v2.0_unigene16368 biogeco2 v2.0 439
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: dna binding 0.0
Internal
biog2_v2.0_unigene17914 biogeco2 v2.0 889
AutoFact: DUF659 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100247282 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain