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Assembly Name: biogeco2 v2.0

Name: Histone deacetylase superfamily

Term: IPR000286  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene1181 biogeco2 v2.0 558
AutoFact: Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
N-terminus
biog2_v2.0_unigene1230 biogeco2 v2.0 289
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 0.0
FL-Next: sp=Putative histone deacetylase 10; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone deacetylase 0.0
C-terminus
biog2_v2.0_unigene1730 biogeco2 v2.0 656
AutoFact: PREDICTED: histone deacetylase 6-like isoform 8 [Macaca mulatta] 5.0e-22
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: histone deacetylase 0.0
Putative Complete
biog2_v2.0_unigene3219 biogeco2 v2.0 569
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 0.0
FL-Next: sp=Histone deacetylase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone deacetylase 0.0
N-terminus
biog2_v2.0_unigene3686 biogeco2 v2.0 1124
AutoFact: phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] ref|NP_850960.1| phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] sp|Q9SXA1.2|P4KA1_ARATH RecName: Full=Phosphatidylinositol 4-kinase alpha; Short=PI4-kinase alpha; Short=PtdIns-4-kinase 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
biog2_v2.0_unigene7460 biogeco2 v2.0 569
AutoFact: histone deacetylase 2 [Arabidopsis thaliana] sp|Q944K3.2|HDA2_ARATH RecName: Full=Histone deacetylase 2 gb|AED93517.1| histone deacetylase 2 [Arabidopsis thaliana] 0.0
FL-Next: Isoform 3 of Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 0.0
Blast2go: histone deacetylase 2 0.0
C-terminus
biog2_v2.0_unigene8566 biogeco2 v2.0 661
AutoFact: Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Putative N-terminus
biog2_v2.0_unigene9278 biogeco2 v2.0 500
AutoFact: Histone deacetylase complex, catalytic component HDA1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SZN1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Internal
biog2_v2.0_unigene9450 biogeco2 v2.0 166
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 0.0
FL-Next: sp=Histone deacetylase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone deacetylase 0.0
Internal
biog2_v2.0_unigene10869 biogeco2 v2.0 196
AutoFact: histone deacetylase 2 [Arabidopsis thaliana] sp|Q944K3.2|HDA2_ARATH RecName: Full=Histone deacetylase 2 gb|AED93517.1| histone deacetylase 2 [Arabidopsis thaliana] 0.0
Blast2go: histone deacetylase 2 0.0
unknown
biog2_v2.0_unigene13791 biogeco2 v2.0 358
AutoFact: histone deacetylase 14 [Arabidopsis thaliana] sp|Q941D6.1|HDA14_ARATH RecName: Full=Histone deacetylase 14 gb|AAK97704.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gb|AAM47377.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gb|AEE86231.1| histone deacetyla 0.0
FL-Next: sp=Histone deacetylase 14; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone deacetylase 0.0
Internal
biog2_v2.0_unigene14074 biogeco2 v2.0 115
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
Blast2go: histone deacetylase 0.0
unknown
biog2_v2.0_unigene14761 biogeco2 v2.0 362
AutoFact: probable histone deacetylase 19 [Zea mays] gb|AAP92528.1|AF322918_1 HDA1 [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
Internal
biog2_v2.0_unigene15371 biogeco2 v2.0 606
AutoFact: Histone deacetylase RPD3/HDA1 class II n=3 Tax=Triticeae RepID=C1IC96_HORVU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 15-like 0.0
C-terminus
biog2_v2.0_unigene18123 biogeco2 v2.0 95
AutoFact: Histone deacetylase complex, catalytic component HDA1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SZN1_PHYPA 0.0
Blast2go: histone deacetylase 0.0
unknown
biog2_v2.0_unigene18970 biogeco2 v2.0 506
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain