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Assembly Name: biogeco2 v2.0

Name: LisH dimerisation motif

Term: IPR006594  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene108 biogeco2 v2.0 477
AutoFact: LisH and RanBPM domains containing protein [Arabidopsis thaliana] gb|AAF80129.1|AC024174_11 Contains similarity to an unknown protein product from Homo sapiens gi|7020818. ESTs gb|T45317, gb|AV561025, gb|AV524849 come from this gene [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene693 biogeco2 v2.0 854
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-07
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: wd repeat-containing 0.0
C-terminus
biog2_v2.0_unigene1262 biogeco2 v2.0 324
AutoFact: MIP-T3 multi-domain protein 8.0e-16
Blast2go: f-box-like wd repeat-containing protein tbl1xr1-like 0.0
unknown
biog2_v2.0_unigene1371 biogeco2 v2.0 958
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ramosa 1 enhancer locus 2 0.0
Complete
biog2_v2.0_unigene1873 biogeco2 v2.0 477
AutoFact: LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana] emb|CAB38936.1| putative protein [Arabidopsis thaliana] emb|CAB80453.1| putative protein [Arabidopsis thaliana] gb|AAV66093.1| At4g37880 [Arabidopsis thaliana] gb|AAX22273.1| At4g37880 [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene2102 biogeco2 v2.0 787
AutoFact: LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana] emb|CAB38936.1| putative protein [Arabidopsis thaliana] emb|CAB80453.1| putative protein [Arabidopsis thaliana] gb|AAV66093.1| At4g37880 [Arabidopsis thaliana] gb|AAX22273.1| At4g37880 [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene2371 biogeco2 v2.0 258
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene2467 biogeco2 v2.0 1450
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: macrophage erythroblast attacher 0.0
Complete
biog2_v2.0_unigene2478 biogeco2 v2.0 1120
AutoFact: LisH and RanBPM domain-containing protein [Arabidopsis thaliana] gb|AAO24554.1| At1g61150 [Arabidopsis thaliana] dbj|BAF00099.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33789.1| LisH and RanBPM domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: and domain-containing protein 0.0
Complete
biog2_v2.0_unigene2588 biogeco2 v2.0 393
AutoFact: MIP-T3 multi-domain protein 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: f-box-like wd repeat-containing protein tbl1xr1-like 0.0
N-terminus
biog2_v2.0_unigene4182 biogeco2 v2.0 1057
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R809_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mannose-binding lectin-like protein 0.0
Complete
biog2_v2.0_unigene5060 biogeco2 v2.0 829
AutoFact: Unassigned protein
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
C-terminus
biog2_v2.0_unigene6068 biogeco2 v2.0 560
AutoFact: pfam00400, WD40, WD domain, G-beta repeat 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Complete
biog2_v2.0_unigene7470 biogeco2 v2.0 778
AutoFact: Transcriptional corepressor LEUNIG n=1 Tax=Arabidopsis thaliana RepID=F4JUD2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Complete
biog2_v2.0_unigene7717 biogeco2 v2.0 426
AutoFact: LisH and RanBPM domain-containing protein [Arabidopsis thaliana] gb|AAO24554.1| At1g61150 [Arabidopsis thaliana] dbj|BAF00099.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33789.1| LisH and RanBPM domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: and domain-containing protein 0.0
C-terminus
biog2_v2.0_unigene7894 biogeco2 v2.0 486
AutoFact: MIP-T3 multi-domain protein 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: f-box-like wd repeat-containing protein tbl1xr1-like 0.0
Internal
biog2_v2.0_unigene8205 biogeco2 v2.0 352
AutoFact: Unassigned protein
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Internal
biog2_v2.0_unigene8356 biogeco2 v2.0 602
AutoFact: pfam00400, WD40, WD domain, G-beta repeat 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Internal
biog2_v2.0_unigene8898 biogeco2 v2.0 618
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: wd repeat-containing 0.0
Internal
biog2_v2.0_unigene9340 biogeco2 v2.0 213
AutoFact: WD-40 repeat protein [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: wd40 repeat-containing protein smu1 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain