Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type

Term: IPR006649  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene288 biogeco2 v2.0 417
• AutoFact: putative small nuclear ribonucleoprotein D1 [Brassica napus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein sm d1 0.0
Putative Complete
biog2_v2.0_unigene916 biogeco2 v2.0 851
• AutoFact: U6 snRNA-associated Sm-like protein LSm8 [Arabidopsis thaliana] ref|NP_001031238.1| U6 snRNA-associated Sm-like protein LSm8 [Arabidopsis thaliana] gb|AAL50104.1| At1g65700/F1E22_3 [Arabidopsis thaliana] gb|AAM16215.1| At1g65700/F1E22_3 [Arabidopsis thali 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u6 snrna-associated sm-like protein lsm8 0.0
Complete
biog2_v2.0_unigene1391 biogeco2 v2.0 1487
• AutoFact: BTB/POZ and M2 domain-containing protein [Arabidopsis thaliana] sp|Q9M8J9.1|BPM2_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 2; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 2; Short=AtBPM2 gb|AAF30312.1|AC018907_12 unknown protein [Ara 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: btb poz and math domain-containing protein 2-like 0.0
Complete
biog2_v2.0_unigene1439 biogeco2 v2.0 310
• AutoFact: BTB-POZ and math domain-containing protein [Arabidopsis thaliana] sp|Q8L765.1|BPM1_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 1; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 1; Short=AtBPM1 gb|AAM97116.1| putative protein [Arabidopsis 0.0
• Blast2go: protein 0.0
unknown
biog2_v2.0_unigene1664 biogeco2 v2.0 592
• AutoFact: Sm-like protein [Arabidopsis thaliana] 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
biog2_v2.0_unigene1732 biogeco2 v2.0 745
• AutoFact: U6 snRNA-associated Sm-like protein LSm1 [Arabidopsis thaliana] ref|NP_850580.1| U6 snRNA-associated Sm-like protein LSm1 [Arabidopsis thaliana] gb|AAM61336.1| Sm protein, putative [Arabidopsis thaliana] gb|AAO22620.1| putative Sm protein [Arabidopsis tha 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u6 snrna-associated sm-like protein lsm1 0.0
Complete
biog2_v2.0_unigene1919 biogeco2 v2.0 444
• AutoFact: Vacuolar protein sorting factor 4B-like n=4 Tax=Poaceae RepID=Q5QMP6_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: katanin p60 atpase-containing subunit a-like 2-like 0.0
Internal
biog2_v2.0_unigene2230 biogeco2 v2.0 1078
• AutoFact: U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana] ref|NP_849931.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana] gb|AAD24820.1| putative snRNP splicing factor [Arabidopsis thaliana] gb|AAO23652.1| At2g03870 [Arabidopsis tha 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u6 snrna-associated sm-like protein lsm7-like 0.0
Complete
biog2_v2.0_unigene2237 biogeco2 v2.0 983
• AutoFact: small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] emb|CAB83134.1| small nuclear ribonucleoprot 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein d2 0.0
Complete
biog2_v2.0_unigene2287 biogeco2 v2.0 773
• AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
biog2_v2.0_unigene2604 biogeco2 v2.0 1259
• AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
biog2_v2.0_unigene3136 biogeco2 v2.0 797
• AutoFact: U6 snRNA-associated Sm-like protein [Arabidopsis thaliana] gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095 and contains a conserved Sm protein PF|01423 motif. EST gb|AI998441 comes from this gene [Arabidopsis th 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u6 snrna-associated sm-like protein lsm3 0.0
Complete
biog2_v2.0_unigene3789 biogeco2 v2.0 415
• AutoFact: Putative snRNP core protein SMX5d n=1 Tax=Oryza sativa Japonica Group RepID=Q7F193_ORYSJ 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: snrnp core sm protein sm-x5-like protein 0.0
Complete
biog2_v2.0_unigene4371 biogeco2 v2.0 811
• AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
biog2_v2.0_unigene4965 biogeco2 v2.0 877
• AutoFact: small nuclear ribonucleoprotein F [Arabidopsis thaliana] ref|XP_002867361.1| hypothetical protein ARALYDRAFT_913456 [Arabidopsis lyrata subsp. lyrata] ref|XP_002885912.1| hypothetical protein ARALYDRAFT_899645 [Arabidopsis lyrata subsp. lyrata] sp|Q9SUM2. 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein f 0.0
Complete
biog2_v2.0_unigene4987 biogeco2 v2.0 907
• AutoFact: small nuclear ribonucleoprotein, putative [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein sm d3 0.0
Complete
biog2_v2.0_unigene5375 biogeco2 v2.0 620
• AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein g 1.4013e-45
Complete
biog2_v2.0_unigene5733 biogeco2 v2.0 407
• AutoFact: putative small nuclear ribonucleoprotein [Arabidopsis thaliana] ref|XP_002886267.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp. lyrata] gb|AAD08943.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana] gb|AAM64436.1| p 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein e 0.0
Putative Complete
biog2_v2.0_unigene7927 biogeco2 v2.0 386
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIQ4_RICCO 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: p-loop containing nucleoside triphosphate hydrolase-like protein 0.0
Internal
biog2_v2.0_unigene8439 biogeco2 v2.0 319
• AutoFact: putative Sm protein F [Oryza sativa Japonica Group] dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group] 8.0e-23
• Blast2go: protein 6.70806e-26
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain