Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco2 v2.0

Name: RWD domain

Term: IPR006575  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene173 biogeco2 v2.0 648
AutoFact: ubiquitin-protein ligase RNF25 [Arabidopsis thaliana] gb|AAY57602.1| RING finger family protein [Arabidopsis thaliana] gb|AEE80040.1| ubiquitin-protein ligase RNF25 [Arabidopsis thaliana] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ubiquitin-protein ligase rnf25 0.0
C-terminus
biog2_v2.0_unigene958 biogeco2 v2.0 540
AutoFact: ubiquitin-protein ligase RNF14 [Arabidopsis thaliana] gb|AAF81330.1|AC007767_10 Contains similarity to ring finger protein 14 from Homo sapiens gb|NM_004290. It contains an IBR domain PF|01485 [Arabidopsis thaliana] gb|AAG60174.1|AC084110_7 hypothetical p 0.0
FL-Next: tr=OSIGBa0142I02-OSIGBa0101B20.23 protein; Oryza sativa (Rice). 0.0
Blast2go: ring finger 0.0
C-terminus
biog2_v2.0_unigene2211 biogeco2 v2.0 668
AutoFact: Rwd domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RQ64_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene7890 biogeco2 v2.0 639
AutoFact: PREDICTED: similar to RWDD4A protein isoform 1 [Gallus gallus] 3.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rwd domain-containing protein 4-like 0.0
N-terminus
biog2_v2.0_unigene13962 biogeco2 v2.0 156
AutoFact: Unassigned protein
unknown
biog2_v2.0_unigene15123 biogeco2 v2.0 192
AutoFact: ubiquitin-protein ligase RNF14 [Arabidopsis thaliana] gb|AAF81330.1|AC007767_10 Contains similarity to ring finger protein 14 from Homo sapiens gb|NM_004290. It contains an IBR domain PF|01485 [Arabidopsis thaliana] gb|AAG60174.1|AC084110_7 hypothetical p 0.0
FL-Next: sp=Putative E3 ubiquitin-protein ligase ARI4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ring finger 0.0
Internal
biog2_v2.0_unigene15659 biogeco2 v2.0 478
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable atp-dependent rna helicase ythdc2-like 0.0
Putative N-terminus
biog2_v2.0_unigene16908 biogeco2 v2.0 246
AutoFact: PREDICTED: similar to RWDD4A protein isoform 1 [Gallus gallus] 3.0e-19
Blast2go: rwd domain-containing protein 4-like 0.0
unknown

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain