Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Helix-hairpin-helix DNA-binding motif, class 1

Term: IPR003583  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene612 biogeco2 v2.0 662
AutoFact: DNA binding protein [Arabidopsis thaliana] gb|AAG51077.1|AC069472_17 unknown protein; 19524-20560 [Arabidopsis thaliana] gb|AAM64678.1| unknown [Arabidopsis thaliana] gb|AEE75167.1| DNA binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding protein 0.0
N-terminus
biog2_v2.0_unigene1983 biogeco2 v2.0 804
AutoFact: DNA repair protein RAD51 homolog n=1 Tax=Solanum lycopersicum RepID=RAD51_SOLLC 0.0
FL-Next: sp=DNA repair protein RAD51 homolog B; Zea mays (Maize). 0.0
Blast2go: dna repair protein rad51 homolog 0.0
C-terminus
biog2_v2.0_unigene8952 biogeco2 v2.0 522
AutoFact: mitochondrial pyruvate dehydrogenase kinase [Brassica napus] gb|ABA25868.1| mitochondrial pyruvate dehydrogenase kinase [Brassica napus] 0.0
FL-Next: tr=cDNA clone:J023007C01, full insert sequence; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: pyruvate dehydrogenase kinase 0.0
C-terminus
biog2_v2.0_unigene9672 biogeco2 v2.0 370
AutoFact: flap endonuclease-1 [Arabidopsis thaliana] gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana] 0.0
FL-Next: sp=Flap endonuclease 1-A; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: flap endonuclease 1a 0.0
Internal
biog2_v2.0_unigene9849 biogeco2 v2.0 360
AutoFact: ARGONAUTE 1 n=2 Tax=Nicotiana RepID=D6RUV9_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: argonaute protein group 0.0
Internal
biog2_v2.0_unigene10157 biogeco2 v2.0 282
AutoFact: Flap endonuclease 1 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=FEN1_OSTLU 0.0
FL-Next: sp=Flap endonuclease 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: flap endonuclease-1 0.0
Internal
biog2_v2.0_unigene10690 biogeco2 v2.0 408
AutoFact: Nuclear cap-binding protein subunit 2 n=3 Tax=Andropogoneae RepID=B6TL33_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear cap-binding protein 0.0
C-terminus
biog2_v2.0_unigene10814 biogeco2 v2.0 244
AutoFact: flap endonuclease-1 [Arabidopsis thaliana] gb|AED93576.1| flap endonuclease-1 [Arabidopsis thaliana] 0.0
Blast2go: flap endonuclease 1a 0.0
unknown
biog2_v2.0_unigene11130 biogeco2 v2.0 554
AutoFact: mitochondrial pyruvate dehydrogenase kinase isoform 1 [Glycine max] gb|ABW03158.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Pisum sativum] gb|ABW03159.1| mitochondrial pyruvate dehydrogenase kinase isoform 1 [Pisum sativum] gb|ABW03162.1| mi 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: pyruvate dehydrogenase kinase 0.0
N-terminus
biog2_v2.0_unigene11262 biogeco2 v2.0 275
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: argonaute protein group 0.0
C-terminus
biog2_v2.0_unigene13977 biogeco2 v2.0 388
AutoFact: NXRV092_H05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV092_H05 5' similar to Arabidopsis thaliana sequence At2g13930 putative retroelement pol polyprotein see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: hypothetical protein VITISV_004415 [Vitis vinifera] 0.0
Internal
biog2_v2.0_unigene14502 biogeco2 v2.0 275
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
biog2_v2.0_unigene14803 biogeco2 v2.0 303
AutoFact: A/G-specific adenine glycosylase [Arabidopsis thaliana] gb|AEE83174.1| A/G-specific adenine glycosylase [Arabidopsis thaliana] 0.0
Blast2go: a g-specific adenine dna glycosylase 0.0
Putative coding
biog2_v2.0_unigene15086 biogeco2 v2.0 366
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
biog2_v2.0_unigene16010 biogeco2 v2.0 318
AutoFact: A/G-specific adenine glycosylase [Arabidopsis thaliana] gb|AEE83174.1| A/G-specific adenine glycosylase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: a g-specific adenine dna glycosylase 0.0
Putative N-terminus
biog2_v2.0_unigene16224 biogeco2 v2.0 335
AutoFact: A/G-specific adenine glycosylase [Arabidopsis thaliana] gb|AEE83174.1| A/G-specific adenine glycosylase [Arabidopsis thaliana] 0.0
Blast2go: a g-specific adenine dna glycosylase 0.0
unknown
biog2_v2.0_unigene16335 biogeco2 v2.0 232
AutoFact: barley mlo defense gene homolog2 [Zea mays] gb|AAK38338.1| seven transmembrane protein Mlo2 [Zea mays] gb|ACN28009.1| unknown [Zea mays] 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene17277 biogeco2 v2.0 457
AutoFact: chloroplast srp54 receptor1 [Zea mays] emb|CAD70570.1| chloroplast SRP receptor cpFtsY precursor [Zea mays] gb|ACR34281.1| unknown [Zea mays] 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: signal recognition 54 kda protein 3.93765e-43
N-terminus
biog2_v2.0_unigene17709 biogeco2 v2.0 1078
AutoFact: Excision repair cross-complementing 1 ercc1, putative n=1 Tax=Ricinus communis RepID=B9RF25_RICCO 0.0
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna excision repair protein ercc-1 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain