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Assembly Name: biogeco2 v2.0

Name: Zinc finger, LSD1-type

Term: IPR005735  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene4562 biogeco2 v2.0 601
• AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: metacaspase 1 0.0
C-terminus
biog2_v2.0_unigene4646 biogeco2 v2.0 714
• AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: metacaspase 1 0.0
N-terminus
biog2_v2.0_unigene4955 biogeco2 v2.0 1288
• AutoFact: zinc finger protein LSD1 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: lsd1-like protein 0.0
Complete
biog2_v2.0_unigene5860 biogeco2 v2.0 451
• AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polygalacturonase non-catalytic subunit jp650 0.0
C-terminus
biog2_v2.0_unigene6208 biogeco2 v2.0 595
• AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polygalacturonase non-catalytic subunit jp650 0.0
Putative N-terminus
biog2_v2.0_unigene12616 biogeco2 v2.0 188
• AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polygalacturonase non-catalytic subunit jp650 0.0
Internal
biog2_v2.0_unigene16044 biogeco2 v2.0 286
• AutoFact: Probable polygalacturonase non-catalytic subunit JP650 n=3 Tax=Arabidopsis RepID=JP650_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polygalacturonase non-catalytic subunit jp650 0.0
C-terminus
biog2_v2.0_unigene19387 biogeco2 v2.0 98
• AutoFact: metacaspase 1 [Arabidopsis thaliana] sp|Q7XJE6.1|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb|AAP84706.1| metacaspase 1 [Arabidopsis thaliana] gb|AAP44514.1| metacaspase 1 [Arabidopsis thalian 0.0
• Blast2go: metacaspase 1 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain