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Assembly Name: biogeco2 v2.0

Name: Bromodomain

Term: IPR001487  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene112 biogeco2 v2.0 561
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Blast2go: atp-dependent helicase brm-like 0.0
Internal
biog2_v2.0_unigene131 biogeco2 v2.0 354
AutoFact: Bromodomain and WD repeat domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNP7_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd40 yvtn repeat and bromo-wdr9-i-like domain-containing protein 0.0
Internal
biog2_v2.0_unigene1855 biogeco2 v2.0 458
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Blast2go: atp-dependent helicase brm-like 0.0
C-terminus
biog2_v2.0_unigene2177 biogeco2 v2.0 939
AutoFact: [BK] COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor gte8-like 0.0
Putative C-terminus
biog2_v2.0_unigene3189 biogeco2 v2.0 838
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Putative Complete
biog2_v2.0_unigene3579 biogeco2 v2.0 463
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Blast2go: atp-dependent helicase brm-like 0.0
Internal
biog2_v2.0_unigene3942 biogeco2 v2.0 1770
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: global transcription factor group e4 0.0
Putative Complete
biog2_v2.0_unigene7634 biogeco2 v2.0 509
AutoFact: [BK] COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor gte8-like 0.0
Internal
biog2_v2.0_unigene8080 biogeco2 v2.0 248
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog2_v2.0_unigene8502 biogeco2 v2.0 810
AutoFact: putative helicase [Arabidopsis thaliana] 0.0
Blast2go: dna helicase ino80-like 0.0
Putative coding
biog2_v2.0_unigene9721 biogeco2 v2.0 267
AutoFact: putative helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna helicase ino80-like 0.0
C-terminus
biog2_v2.0_unigene9778 biogeco2 v2.0 292
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SH81_RICCO 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 8.65302e-42
C-terminus
biog2_v2.0_unigene9982 biogeco2 v2.0 385
AutoFact: Bromodomain-containing protein n=1 Tax=Ricinus communis RepID=B9SV90_RICCO 4.0e-38
Blast2go: bromodomain-containing protein 2.4266e-39
Coding
biog2_v2.0_unigene10049 biogeco2 v2.0 538
AutoFact: Bromodomain-containing protein n=1 Tax=Ricinus communis RepID=B9SV90_RICCO 4.0e-38
Blast2go: bromodomain-containing protein 2.4266e-39
Coding
biog2_v2.0_unigene10319 biogeco2 v2.0 286
AutoFact: Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone acetyltransferase 0.0
Internal
biog2_v2.0_unigene10345 biogeco2 v2.0 529
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
Blast2go: atp-dependent helicase brm-like 0.0
Internal
biog2_v2.0_unigene10563 biogeco2 v2.0 479
AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
Blast2go: global transcription factor group e4 0.0
Putative coding
biog2_v2.0_unigene10856 biogeco2 v2.0 272
AutoFact: ATPase splayed [Arabidopsis thaliana] gb|AEC08101.1| ATPase splayed [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atpase splayed 0.0
Internal
biog2_v2.0_unigene11070 biogeco2 v2.0 330
AutoFact: ATP-dependent helicase BRM [Arabidopsis thaliana] sp|Q6EVK6.1|BRM_ARATH RecName: Full=ATP-dependent helicase BRM; Short=AtBRM; AltName: Full=Protein BRAHMA emb|CAG28313.1| putative SNF2 subfamily ATPase [Arabidopsis thaliana] gb|AEC10632.1| ATP-dependent 0.0
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: atp-dependent helicase brm 0.0
Internal
biog2_v2.0_unigene11487 biogeco2 v2.0 320
AutoFact: pfam05110, AF-4, AF-4 proto-oncoprotein 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain