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Assembly Name: biogeco2 v2.0

Name: Histone-fold

Term: IPR009072  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene7963 biogeco2 v2.0 526
AutoFact: Ccaat-binding transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RHZ1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear transcription factor y subunit c-9 0.0
C-terminus
biog2_v2.0_unigene7965 biogeco2 v2.0 616
AutoFact: nuclear factor Y, subunit C11 [Arabidopsis thaliana] gb|AAL58929.1|AF462841_1 At3g12480/MQC3.32 [Arabidopsis thaliana] dbj|BAB03155.1| unnamed protein product [Arabidopsis thaliana] gb|AAN28786.1| At3g12480/MQC3.32 [Arabidopsis thaliana] gb|AEE75200.1| nu 4.00001e-41
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene8187 biogeco2 v2.0 376
AutoFact: nuclear transcription factor Y subunit B-3 [Arabidopsis thaliana] sp|O23310.1|NFYB3_ARATH RecName: Full=Nuclear transcription factor Y subunit B-3; Short=AtNF-YB-3; AltName: Full=Transcriptional activator HAP3C emb|CAB10233.1| CCAAT-binding transcription 0.0
Blast2go: ccaat-box binding factor hap3 0.0
unknown
biog2_v2.0_unigene8294 biogeco2 v2.0 536
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh62-like 0.0
C-terminus
biog2_v2.0_unigene8796 biogeco2 v2.0 661
AutoFact: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9SXF3_RICCO 0.0
Blast2go: mlo-like protein 4 0.0
Coding
biog2_v2.0_unigene8977 biogeco2 v2.0 433
AutoFact: Isoform 2 of Probable carboxylesterase 11 n=1 Tax=Arabidopsis thaliana RepID=Q9LK21-2 0.0
FL-Next: sp=Probable carboxylesterase 16; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable carboxylesterase 11-like 0.0
C-terminus
biog2_v2.0_unigene9567 biogeco2 v2.0 625
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h2 0.0
Complete
biog2_v2.0_unigene10624 biogeco2 v2.0 223
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 1.99993e-41
Blast2go: histone h2b 0.0
unknown
biog2_v2.0_unigene10836 biogeco2 v2.0 477
AutoFact: transcription initiation factor TFIID subunit D5 [Arabidopsis thaliana] ref|NP_849592.1| transcription initiation factor TFIID subunit D5 [Arabidopsis thaliana] ref|NP_001030969.1| transcription initiation factor TFIID subunit D5 [Arabidopsis thaliana] gb 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: transcription initiation factor tfiid subunit d5 0.0
C-terminus
biog2_v2.0_unigene11962 biogeco2 v2.0 176
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 1.99993e-41
Blast2go: histone h2 0.0
unknown
biog2_v2.0_unigene12255 biogeco2 v2.0 604
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h3 0.0
Complete
biog2_v2.0_unigene12258 biogeco2 v2.0 499
AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 9.0e-26
Blast2go: histone h2a 1.93918e-30
unknown
biog2_v2.0_unigene14031 biogeco2 v2.0 314
AutoFact: nuclear factor Y, subunit C11 [Arabidopsis thaliana] gb|AAL58929.1|AF462841_1 At3g12480/MQC3.32 [Arabidopsis thaliana] dbj|BAB03155.1| unnamed protein product [Arabidopsis thaliana] gb|AAN28786.1| At3g12480/MQC3.32 [Arabidopsis thaliana] gb|AEE75200.1| nu 3.0e-35
Blast2go: negative cofactor 2 transcriptional co- 0.0
Coding
biog2_v2.0_unigene14076 biogeco2 v2.0 117
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 1.99993e-41
Blast2go: histone h2b 0.0
unknown
biog2_v2.0_unigene14324 biogeco2 v2.0 201
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 3.00004e-41
Blast2go: histone h2b 0.0
unknown
biog2_v2.0_unigene14599 biogeco2 v2.0 226
AutoFact: Isoform 2 of Probable carboxylesterase 11 n=1 Tax=Arabidopsis thaliana RepID=Q9LK21-2 0.0
Blast2go: probable carboxylesterase 11-like 0.0
Putative coding
biog2_v2.0_unigene15202 biogeco2 v2.0 171
AutoFact: TBP-associated factor 8 [Arabidopsis thaliana] gb|AAK25888.1|AF360178_1 unknown protein [Arabidopsis thaliana] emb|CAB36711.1| hypothetical protein [Arabidopsis thaliana] emb|CAB80151.1| hypothetical protein [Arabidopsis thaliana] gb|AAK64071.1| unknown p 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene15446 biogeco2 v2.0 245
AutoFact: TATA binding protein associated factor n=1 Tax=Solanum tuberosum RepID=Q3LHL0_SOLTU 7.0e-37
Blast2go: transcription initiation factor tfiid subunit a 4.14924e-42
unknown
biog2_v2.0_unigene15487 biogeco2 v2.0 48
AutoFact: Histone H4 n=1 Tax=Camellia sinensis RepID=F4YF87_CAMSI 5.0e-38
Blast2go: histone h4 0.0
unknown
biog2_v2.0_unigene15705 biogeco2 v2.0 412
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 4.0e-29
Blast2go: bhlh transcription factor 0.0
Putative coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain