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Assembly Name: biogeco2 v2.0

Name: AT hook, DNA-binding motif

Term: IPR017956  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene12864 biogeco2 v2.0 453
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDQ4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
C-terminus
biog2_v2.0_unigene12934 biogeco2 v2.0 422
AutoFact: Putative microtubule-associated protein, identical [Solanum demissum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 65-kda microtubule-associated protein 3-like 0.0
Internal
biog2_v2.0_unigene13213 biogeco2 v2.0 291
AutoFact: cohesin complex subunit SA-1/2 [Arabidopsis thaliana] emb|CAB45374.1| stromalin protein [Arabidopsis thaliana] gb|AAL36271.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gb|AAC63652.2| putative putative sister-chromatide co 0.0
Blast2go: sister-chromatide cohesion protein 0.0
unknown
biog2_v2.0_unigene13307 biogeco2 v2.0 165
AutoFact: AP2/B3 domain-containing transcription factor [Arabidopsis thaliana] sp|Q1G3M3.1|Y3918_ARATH RecName: Full=B3 domain-containing protein At3g19184 gb|ABF59230.1| unknown protein [Arabidopsis thaliana] dbj|BAH30459.1| hypothetical protein [Arabidopsis thali 4.00001e-41
FL-Next: sp=B3 domain-containing protein Os05g0481400; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: b3 domain-containing protein 0.0
Internal
biog2_v2.0_unigene13701 biogeco2 v2.0 287
AutoFact: Transcription-coupled repair protein CSB/RAD26 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SCT4_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna repair and recombination protein 0.0
Internal
biog2_v2.0_unigene13719 biogeco2 v2.0 550
AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
C-terminus
biog2_v2.0_unigene13749 biogeco2 v2.0 567
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7SV05_VITVI 0.0
FL-Next: sp=Histone-lysine N-methyltransferase ATX3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histone-lysine n-methyltransferase 0.0
Internal
biog2_v2.0_unigene13890 biogeco2 v2.0 349
AutoFact: Histone-lysine n-methyltransferase, suvh, putative n=1 Tax=Ricinus communis RepID=B9SHW2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: set domain-containing protein 0.0
Putative C-terminus
biog2_v2.0_unigene13933 biogeco2 v2.0 321
AutoFact: Bromodomain n=1 Tax=Medicago truncatula RepID=Q1SKV9_MEDTR 0.0
Blast2go: dna-binding bromodomain-containing protein 0.0
Coding
biog2_v2.0_unigene14159 biogeco2 v2.0 339
AutoFact: Protein ariadne-1, putative n=1 Tax=Ricinus communis RepID=B9RZD6_RICCO 0.0
FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein ariadne- 0.0
Internal
biog2_v2.0_unigene14235 biogeco2 v2.0 215
AutoFact: Transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gb|AAL60025.1| unknown protein [Arabidopsis thaliana] gb|AAM20342.1| unknown protein [Arabidopsis thaliana] gb|AEE81964.1| Transcription factor jumonji (jmjC) domain-cont 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: transcription factor jumonji domain-containing protein 0.0
Internal
biog2_v2.0_unigene14236 biogeco2 v2.0 382
AutoFact: Zinc-finger domain of monoamine-oxidase A repressor R1 [Arabidopsis thaliana] dbj|BAF00863.1| hypothetical protein [Arabidopsis thaliana] gb|AEE86755.1| Zinc-finger domain of monoamine-oxidase A repressor R1 [Arabidopsis thaliana] 0.0
Blast2go: ubiquitin-protein ligase zinc ion binding protein 0.0
Coding
biog2_v2.0_unigene14269 biogeco2 v2.0 152
AutoFact: putative AT-hook DNA-binding protein [Oryza sativa Japonica Group] gb|EAZ07603.1| hypothetical protein OsI_29854 [Oryza sativa Indica Group] 5.60519e-45
Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene14455 biogeco2 v2.0 127
AutoFact: putative MATE efflux family protein [Oryza sativa Japonica Group] 3.0e-28
Blast2go: multidrug resistance 1.1291e-34
unknown
biog2_v2.0_unigene14554 biogeco2 v2.0 405
AutoFact: Zinc-finger domain of monoamine-oxidase A repressor R1 [Arabidopsis thaliana] dbj|BAF00863.1| hypothetical protein [Arabidopsis thaliana] gb|AEE86755.1| Zinc-finger domain of monoamine-oxidase A repressor R1 [Arabidopsis thaliana] 0.0
Blast2go: ubiquitin-protein ligase zinc ion binding protein 0.0
unknown
biog2_v2.0_unigene14620 biogeco2 v2.0 504
AutoFact: AT-hook DNA-binding protein [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Putative N-terminus
biog2_v2.0_unigene14705 biogeco2 v2.0 339
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog2_v2.0_unigene14741 biogeco2 v2.0 306
AutoFact: protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] sp|Q9LYT3.1|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 emb|CAB86931.1| putative protein [Arabidopsis thaliana] emb|C 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transparent testa 12 0.0
Internal
biog2_v2.0_unigene14908 biogeco2 v2.0 430
AutoFact: Androgen induced inhibitor of proliferation (As3) / pds5, putative n=1 Tax=Ricinus communis RepID=B9T579_RICCO 4.0e-19
FL-Next: sp=DNA mismatch repair protein Msh6-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: sister chromatid cohesion protein pds5-like protein 1.1571e-21
Internal
biog2_v2.0_unigene15014 biogeco2 v2.0 326
AutoFact: Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9SYY2_RICCO 0.0
Blast2go: microtubule-associated proteins 65-1 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain