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Assembly Name: biogeco2 v2.0

Name: Ubiquitin-conjugating enzyme/RWD-like

Term: IPR016135  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene10845 biogeco2 v2.0 615
AutoFact: [O] COG5078 Ubiquitin-protein ligase 5.0e-11
FL-Next: sp=Probable ubiquitin-conjugating enzyme E2 25; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitin-conjugating enzyme e2-like protein 0.0
Putative C-terminus
biog2_v2.0_unigene12137 biogeco2 v2.0 537
AutoFact: Ubiquitin carrier protein n=1 Tax=Sorghum bicolor RepID=C5XGM7_SORBI 2.0e-28
Blast2go: ubiquitin-conjugating enzyme x 1.00646e-32
Putative coding
biog2_v2.0_unigene13033 biogeco2 v2.0 293
AutoFact: Unassigned protein
Blast2go: vhs domain-containing protein at3g16270-like 0.0
unknown
biog2_v2.0_unigene13962 biogeco2 v2.0 156
AutoFact: Unassigned protein
unknown
biog2_v2.0_unigene14738 biogeco2 v2.0 343
AutoFact: Unassigned protein
FL-Next: sp=Probable ubiquitin-conjugating enzyme E2 23; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 9.14712e-20
Internal
biog2_v2.0_unigene15123 biogeco2 v2.0 192
AutoFact: ubiquitin-protein ligase RNF14 [Arabidopsis thaliana] gb|AAF81330.1|AC007767_10 Contains similarity to ring finger protein 14 from Homo sapiens gb|NM_004290. It contains an IBR domain PF|01485 [Arabidopsis thaliana] gb|AAG60174.1|AC084110_7 hypothetical p 0.0
FL-Next: sp=Putative E3 ubiquitin-protein ligase ARI4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ring finger 0.0
Internal
biog2_v2.0_unigene15659 biogeco2 v2.0 478
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable atp-dependent rna helicase ythdc2-like 0.0
Putative N-terminus
biog2_v2.0_unigene15713 biogeco2 v2.0 335
AutoFact: Glycoside hydrolase, family 17; Virulence factor, pectin lyase fold; X8 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glucan endo- -beta-glucosidase 0.0
Internal
biog2_v2.0_unigene15777 biogeco2 v2.0 346
AutoFact: Ubiquitin-conjugating enzyme 13, E2 n=3 Tax=Embryophyta RepID=D8QMV8_SELML 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene16347 biogeco2 v2.0 372
AutoFact: putative ubiquitin-conjugating enzyme E2 23 [Arabidopsis thaliana] sp|Q9ZVX1.1|UBC23_ARATH RecName: Full=Probable ubiquitin-conjugating enzyme E2 23; AltName: Full=Ubiquitin carrier protein 23 gb|AAC64223.1| putative ubiquitin-conjugating enzyme [Arabidop 0.0
FL-Next: sp=Probable ubiquitin-conjugating enzyme E2 23; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable ubiquitin-conjugating enzyme e2 23-like 0.0
Internal
biog2_v2.0_unigene16698 biogeco2 v2.0 298
AutoFact: ubiquitin conjugating enzyme-like [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubc37 like protein 0.0
N-terminus
biog2_v2.0_unigene16908 biogeco2 v2.0 246
AutoFact: PREDICTED: similar to RWDD4A protein isoform 1 [Gallus gallus] 3.0e-19
Blast2go: rwd domain-containing protein 4-like 0.0
unknown
biog2_v2.0_unigene17052 biogeco2 v2.0 230
AutoFact: uncharacterized protein [Arabidopsis thaliana] ref|NP_974532.1| uncharacterized protein [Arabidopsis thaliana] ref|NP_974533.1| uncharacterized protein [Arabidopsis thaliana] ref|NP_001118964.1| uncharacterized protein [Arabidopsis thaliana] emb|CAB40065. 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100829418 0.0
N-terminus
biog2_v2.0_unigene18546 biogeco2 v2.0 617
AutoFact: [O] COG5078 Ubiquitin-protein ligase 5.0e-11
Blast2go: ubiquitin-conjugating enzyme e2-like protein 0.0
Putative coding
biog2_v2.0_unigene18561 biogeco2 v2.0 506
AutoFact: Ubiquitin-conjugating enzyme E2 35 n=42 Tax=Embryophyta RepID=UBC35_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene18576 biogeco2 v2.0 979
AutoFact: Ubiquitin carrier protein n=1 Tax=Populus trichocarpa RepID=B9HDK6_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene18611 biogeco2 v2.0 855
AutoFact: Ubiquitin carrier protein n=2 Tax=Picea RepID=A9NRG7_PICSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-conjugating enzyme e2 i 0.0
Complete
biog2_v2.0_unigene18669 biogeco2 v2.0 739
AutoFact: Ubiquitin-conjugating enzyme 2 n=1 Tax=Elaeis guineensis RepID=B3TM02_ELAGV 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-conjugating enzyme 2 0.0
Putative Complete
biog2_v2.0_unigene18987 biogeco2 v2.0 296
AutoFact: Ubiquitin carrier protein n=2 Tax=Picea RepID=A9NRG7_PICSI 0.0
Blast2go: ubiquitin-conjugating enzyme e2 i 0.0
unknown
biog2_v2.0_unigene19516 biogeco2 v2.0 789
AutoFact: Ubiquitin-conjugating enzyme 13, E2 n=3 Tax=Embryophyta RepID=D8QMV8_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain