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Assembly Name: biogeco2 v2.0

Name: DNA ligase, ATP-dependent, conserved site

Term: IPR016059  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene10856 biogeco2 v2.0 272
AutoFact: ATPase splayed [Arabidopsis thaliana] gb|AEC08101.1| ATPase splayed [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atpase splayed 0.0
Internal
biog2_v2.0_unigene11542 biogeco2 v2.0 409
AutoFact: alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana] gb|AAL15341.1| At2g47630/F17A22.2 [Arabidopsis thaliana] gb|AAM14848.1| putative phospholipase [Arabidopsis thaliana] gb|AAC63619.2| putative phospholipase [Arabidopsis thaliana] gb|AAM 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: esterase lipase thioesterase family protein 0.0
Internal
biog2_v2.0_unigene11816 biogeco2 v2.0 451
AutoFact: Ethylene response factor 1 n=1 Tax=Cucumis sativus RepID=Q5S004_CUCSA 4.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ethylene-responsive element binding factor-like protein 1.6707e-15
N-terminus
biog2_v2.0_unigene11841 biogeco2 v2.0 536
AutoFact: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9RHH9_RICCO 0.0
Blast2go: tetratricopeptide repeat -containing protein 0.0
unknown
biog2_v2.0_unigene12552 biogeco2 v2.0 293
AutoFact: serine/threonine-prot (ISS) [Ostreococcus tauri] emb|CAL57156.1| serine/threonine-prot (ISS) [Ostreococcus tauri] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: mitotic checkpoint serine threonine-protein kinase bub1-like 0.0
Internal
biog2_v2.0_unigene12654 biogeco2 v2.0 308
AutoFact: Ethylene responsive element binding protein C4 n=2 Tax=Capsicum annuum RepID=Q32W72_CAPAN 5.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: erf2 transcription factor 4.4167e-40
C-terminus
biog2_v2.0_unigene13667 biogeco2 v2.0 371
AutoFact: putative phospholipase [Arabidopsis thaliana] gb|AAC27833.1| putative phospholipase [Arabidopsis thaliana] 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: esterase lipase thioesterase family protein 0.0
Putative C-terminus
biog2_v2.0_unigene14374 biogeco2 v2.0 416
AutoFact: allantoinase [Robinia pseudoacacia] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: probable allantoinase 1-like 0.0
Internal
biog2_v2.0_unigene14442 biogeco2 v2.0 328
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Coding
biog2_v2.0_unigene14677 biogeco2 v2.0 342
AutoFact: FAP multi-domain protein 8.0e-05
Blast2go: uncharacterized protein loc100809777 7.79977e-41
Coding
biog2_v2.0_unigene14705 biogeco2 v2.0 339
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog2_v2.0_unigene14916 biogeco2 v2.0 161
AutoFact: hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] gb|AAK25929.1|AF360219_1 putative lipase [Arabidopsis thaliana] gb|AAK93696.1| putative lipase [Arabidopsis thaliana] gb|AED92248.1| hydrolase, alpha/beta fold family protein [Arabidopsis th 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: alpha beta fold family protein 0.0
Internal
biog2_v2.0_unigene15059 biogeco2 v2.0 441
AutoFact: Ethylene-responsive transcription factor RAP2-3 n=2 Tax=Arabidopsis RepID=RAP23_ARATH 8.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ap2 domain containing protein 3.38974e-42
N-terminus
biog2_v2.0_unigene15618 biogeco2 v2.0 377
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog2_v2.0_unigene16411 biogeco2 v2.0 234
AutoFact: pfam00168, C2, C2 domain 9.0e-06
Blast2go: protein 0.0
Coding
biog2_v2.0_unigene16416 biogeco2 v2.0 299
AutoFact: PsbP domain containing protein 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: psbp domain-containing protein chloroplastic-like 0.0
Internal
biog2_v2.0_unigene16648 biogeco2 v2.0 355
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger 0.0
N-terminus
biog2_v2.0_unigene16782 biogeco2 v2.0 536
AutoFact: DNA ligase n=1 Tax=Sorghum bicolor RepID=C5WXG6_SORBI 3.0e-12
FL-Next: sp=DNA ligase; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: dna ligase 2.76907e-13
Internal
biog2_v2.0_unigene16984 biogeco2 v2.0 274
AutoFact: CHD3-type chromatin-remodeling factor PICKLE n=2 Tax=Arabidopsis RepID=PKL_ARATH 6.99949e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog2_v2.0_unigene17657 biogeco2 v2.0 249
AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L102_MALDO 2.0e-18
Blast2go: ethylene-responsive element binding factor-like protein 1.14863e-21
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain