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Assembly Name: biogeco2 v2.0

Name: AAA+ ATPase domain

Term: IPR003593  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene16080 biogeco2 v2.0 242
AutoFact: polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb|AAU90050.1 2.0e-25
Blast2go: polypyrimidine tract binding 5.90211e-32
unknown
biog2_v2.0_unigene16090 biogeco2 v2.0 549
AutoFact: RecName: Full=Probable pleiotropic drug resistance protein 2 emb|CAD59566.1| PDR-like ABC transporter [Oryza sativa Japonica Group] tpg|DAA00885.1| TPA_exp: PDR2 ABC transporter [Oryza sativa (japonica cultivar-group)] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
biog2_v2.0_unigene16154 biogeco2 v2.0 243
AutoFact: ATP-dependent protease La, putative n=1 Tax=Ricinus communis RepID=B9SS30_RICCO 0.0
FL-Next: sp=Lon protease homolog 2, peroxisomal; Spinacia oleracea (Spinach). 0.0
Blast2go: atp-dependent protease 0.0
Internal
biog2_v2.0_unigene16178 biogeco2 v2.0 182
AutoFact: Abc transporter, putative n=1 Tax=Ricinus communis RepID=B9RFV1_RICCO 5.0e-30
Blast2go: protein trigalactosyldiacylglycerol chloroplastic-like 7.93294e-36
unknown
biog2_v2.0_unigene16199 biogeco2 v2.0 461
AutoFact: ATP-dependent peptidase, putative n=1 Tax=Ricinus communis RepID=B9RIL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
Internal
biog2_v2.0_unigene16258 biogeco2 v2.0 442
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SKK6_RICCO 1.0e-14
Blast2go: probable wrky transcription factor 12-like 4.36942e-17
unknown
biog2_v2.0_unigene16326 biogeco2 v2.0 340
AutoFact: PREDICTED: similar to ftsH-like protease n=1 Tax=Vitis vinifera RepID=UPI0001982E96 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh mitochondrial-like 0.0
Internal
biog2_v2.0_unigene16387 biogeco2 v2.0 314
AutoFact: MDR-like ABC transporter n=1 Tax=Ginkgo biloba RepID=E6Y0T2_GINBI 0.0
Blast2go: multidrug pheromone mdr abc transporter family 0.0
unknown
biog2_v2.0_unigene16409 biogeco2 v2.0 505
AutoFact: ATP-dependent transporter, putative n=1 Tax=Ricinus communis RepID=B9RUV8_RICCO 0.0
Blast2go: abc transporter f family member 4-like 0.0
Coding
biog2_v2.0_unigene16488 biogeco2 v2.0 387
AutoFact: AAA-type ATPase-like protein n=3 Tax=Arabidopsis RepID=O64728_ARATH 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: aaa-type atpase-like protein 0.0
Internal
biog2_v2.0_unigene16540 biogeco2 v2.0 505
AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 2.99878e-43
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: mismatch repair endonuclease pms2-like 2.10195e-44
N-terminus
biog2_v2.0_unigene16574 biogeco2 v2.0 307
AutoFact: ATP synthase subunit beta, mitochondrial n=4 Tax=Nicotiana RepID=ATPBM_NICPL 0.0
FL-Next: sp=ATP synthase subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp synthase beta chain 0.0
N-terminus
biog2_v2.0_unigene16575 biogeco2 v2.0 230
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: minichromosome maintenance protein 0.0
Internal
biog2_v2.0_unigene16581 biogeco2 v2.0 179
AutoFact: Signal recognition particle 54 kDa protein 2 n=11 Tax=Magnoliophyta RepID=SR542_SOLLC 0.0
Blast2go: signal recognition particle 54 kda protein 3 0.0
unknown
biog2_v2.0_unigene16619 biogeco2 v2.0 280
AutoFact: myosin XI [Nicotiana tabacum] 0.0
Blast2go: myosin-h heavy chain-like 0.0
unknown
biog2_v2.0_unigene16687 biogeco2 v2.0 309
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
N-terminus
biog2_v2.0_unigene16700 biogeco2 v2.0 236
AutoFact: putative DNA-binding protein [Arabidopsis thaliana] gb|AED94034.1| putative DNA-binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-binding protein smubp-2-like 0.0
C-terminus
biog2_v2.0_unigene16710 biogeco2 v2.0 441
AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase 0.0
Internal
biog2_v2.0_unigene16725 biogeco2 v2.0 558
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R8R6_RICCO 0.0
FL-Next: sp=Probable S-acyltransferase At4g15080; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger 0.0
Internal
biog2_v2.0_unigene16743 biogeco2 v2.0 139
AutoFact: F-box protein [Arabidopsis thaliana] sp|Q9FNK5.1|FB285_ARATH RecName: Full=F-box protein At5g46170 dbj|BAB08262.1| unnamed protein product [Arabidopsis thaliana] gb|AAL49842.1| unknown protein [Arabidopsis thaliana] gb|AAN13195.1| unknown protein [Arabido 0.0
Blast2go: f-box family protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain