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Assembly Name: biogeco2 v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene12300 biogeco2 v2.0 370
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal
biog2_v2.0_unigene12322 biogeco2 v2.0 304
AutoFact: Pentatricopeptide repeat protein 65 n=2 Tax=Funariaceae RepID=F5CAD8_FUNHY 7.00005e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Putative C-terminus
biog2_v2.0_unigene12377 biogeco2 v2.0 364
AutoFact: Alpha-amylase n=2 Tax=Hordeum vulgare subsp. vulgare RepID=C3W8N1_HORVD 0.0
Blast2go: alpha-amylase-like 2 0.0
unknown
biog2_v2.0_unigene12390 biogeco2 v2.0 332
AutoFact: BHLH transcription factor PTF1-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6EPZ6_ORYSJ 9.94922e-44
Blast2go: transcription factor bhlh66-like 0.0
unknown
biog2_v2.0_unigene12426 biogeco2 v2.0 129
AutoFact: Unassigned protein
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene12428 biogeco2 v2.0 180
AutoFact: DNA-binding protein [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene12450 biogeco2 v2.0 292
AutoFact: Alpha-amylase n=2 Tax=Hordeum vulgare subsp. vulgare RepID=C3W8N1_HORVD 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: alpha-amylase-like 2 0.0
Internal
biog2_v2.0_unigene12470 biogeco2 v2.0 335
AutoFact: MtN3_slv domain containing protein 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bidirectional sugar transporter sweet4-like 0.0
Internal
biog2_v2.0_unigene12526 biogeco2 v2.0 546
AutoFact: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gb|AEE79701.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene12610 biogeco2 v2.0 403
AutoFact: putative DNA binding domain containing protein [Oryza sativa Japonica Group] gb|AAP54158.1| SAP domain containing protein, expressed [Oryza sativa Japonica Group] 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: plastid transcriptionally active 3 1.73948e-39
C-terminus
biog2_v2.0_unigene12630 biogeco2 v2.0 341
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana] emb|CAB77760.1| hypothetical protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene12643 biogeco2 v2.0 375
AutoFact: uncharacterized protein [Arabidopsis thaliana] gb|AAK25939.1|AF360229_1 unknown protein [Arabidopsis thaliana] dbj|BAB11608.1| unnamed protein product [Arabidopsis thaliana] gb|AAK64088.1| unknown protein [Arabidopsis thaliana] gb|AED97903.1| uncharacteri 0.0
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: uncharacterized protein 0.0
Internal
biog2_v2.0_unigene12671 biogeco2 v2.0 425
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LIL5.1|PP233_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g15200 dbj|BAB02574.1| unnamed protein product [Arabidopsis thaliana] gb|AEE75631.1| pentatric 6.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene12684 biogeco2 v2.0 330
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gb|AAF79432.1|AC025808_14 F18O14.27 [Arabidopsis thaliana] gb|AEE29863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Pentatricopeptide repeat-containing protein At1g01970; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene12704 biogeco2 v2.0 434
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene12711 biogeco2 v2.0 690
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 2.62188e-16
N-terminus
biog2_v2.0_unigene12723 biogeco2 v2.0 383
AutoFact: Pentatricopeptide repeat-containing protein n=3 Tax=Arabidopsis RepID=F4I2B7_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene12768 biogeco2 v2.0 266
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat protein 2.04375e-27
Internal
biog2_v2.0_unigene12783 biogeco2 v2.0 468
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R930_RICCO 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Coding
biog2_v2.0_unigene12974 biogeco2 v2.0 472
AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat protein 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain