Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene8114 biogeco2 v2.0 508
AutoFact: diacylglycerol kinase 3 [Arabidopsis thaliana] gb|AAL57635.1| At2g18730/MSF3.11 [Arabidopsis thaliana] gb|AAM98254.1| At2g18730/MSF3.11 [Arabidopsis thaliana] gb|AEC06799.1| diacylglycerol kinase 3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: diacylglycerol kinase 0.0
Complete
biog2_v2.0_unigene8150 biogeco2 v2.0 505
AutoFact: putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transferring glycosyl 0.0
Internal
biog2_v2.0_unigene8190 biogeco2 v2.0 449
AutoFact: Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gb|AAG51102.1|AC025295_10 unknown protein [Arabidopsis thaliana] gb|AAK59597.1| unknown protein [Arabidopsis thaliana] gb|AAL34230.1| unknown protein [Arabidopsis thaliana] gb|AE 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: uncharacterized membrane 0.0
C-terminus
biog2_v2.0_unigene8288 biogeco2 v2.0 431
AutoFact: dsRNA-binding protein [Brassica oleracea var. gongylodes] emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera] 7.00649e-44
Blast2go: dsrna-binding protein 0.0
unknown
biog2_v2.0_unigene8347 biogeco2 v2.0 656
AutoFact: nucleobase:cation symporter-1, NCS1 family [Arabidopsis thaliana] gb|AAK60307.1|AF385716_1 AT5g03560/F12E4 [Arabidopsis thaliana] gb|AAL87384.1| AT5g03560/F12E4 [Arabidopsis thaliana] gb|AED90626.1| nucleobase:cation symporter-1, NCS1 family [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dnaj homolog subfamily c member 28-like 0.0
Putative Complete
biog2_v2.0_unigene8397 biogeco2 v2.0 376
AutoFact: PREDICTED: similar to Callose synthase 10 n=1 Tax=Vitis vinifera RepID=UPI0001985174 2.00386e-43
FL-Next: sp=Callose synthase 10; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: callose synthase 10 4.09179e-43
Internal
biog2_v2.0_unigene8399 biogeco2 v2.0 367
AutoFact: CBL-interacting protein kinase 04 n=3 Tax=Vitis vinifera RepID=A5BQ82_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cbl-interacting serine threonine-protein 0.0
C-terminus
biog2_v2.0_unigene8473 biogeco2 v2.0 346
AutoFact: Alpha-amylase n=2 Tax=Hordeum vulgare subsp. vulgare RepID=C3W8N1_HORVD 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: alpha-amylase-like 2 0.0
Internal
biog2_v2.0_unigene8486 biogeco2 v2.0 590
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] ref|NP_001031806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SZL5.1|PP356_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38150 emb|CAB37 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
N-terminus
biog2_v2.0_unigene8544 biogeco2 v2.0 407
AutoFact: protein kinase-like protein [Arabidopsis thaliana] gb|AAF87863.1|AC022520_7 similar to cdc2 protein kinase [Arabidopsis thaliana] gb|AEE32884.1| protein kinase-like protein [Arabidopsis thaliana] 0.0
Blast2go: probable serine threonine-protein kinase at1g54610-like 0.0
unknown
biog2_v2.0_unigene8817 biogeco2 v2.0 588
AutoFact: DNA-binding protein [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
N-terminus
biog2_v2.0_unigene8895 biogeco2 v2.0 586
AutoFact: ALG2-interacting protein X [Nicotiana tabacum] 0.0
FL-Next: tr=Programmed cell death 6-interacting protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: alg2-interacting protein x 0.0
Internal
biog2_v2.0_unigene8921 biogeco2 v2.0 430
AutoFact: RecName: Full=125 kDa kinesin-related protein dbj|BAA23159.1| TKRP125 [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 125 kda kinesin-related 0.0
Internal
biog2_v2.0_unigene8955 biogeco2 v2.0 398
AutoFact: Putative NPK1-related protein kinase [Oryza sativa Japonica Group] gb|AAM47616.1|AC122147_5 Putative NPK1-related protein kinase [Oryza sativa Japonica Group] gb|AAP51983.1| Protein kinase domain containing protein [Oryza sativa Japonica Group] 9.99995e-41
Blast2go: protein 0.0
Putative coding
biog2_v2.0_unigene9002 biogeco2 v2.0 646
AutoFact: glycine-rich RNA-binding protein [Physcomitrella patens] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
biog2_v2.0_unigene9047 biogeco2 v2.0 252
AutoFact: diacylglycerol kinase 3 [Arabidopsis thaliana] gb|AAL57635.1| At2g18730/MSF3.11 [Arabidopsis thaliana] gb|AAM98254.1| At2g18730/MSF3.11 [Arabidopsis thaliana] gb|AEC06799.1| diacylglycerol kinase 3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: diacylglycerol kinase 0.0
Internal
biog2_v2.0_unigene9088 biogeco2 v2.0 358
AutoFact: dsRNA-binding protein [Brassica oleracea var. gongylodes] emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera] 7.00649e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dsrna-binding protein 0.0
Putative Complete
biog2_v2.0_unigene9140 biogeco2 v2.0 631
AutoFact: Eukaryotic initiation factor iso4G n=1 Tax=Carica papaya RepID=E3V0I0_CARPA 0.0
FL-Next: sp=Eukaryotic initiation factor iso-4F subunit p82-34; Triticum aestivum (Wheat). 0.0
Blast2go: eukaryotic translation initiation factor 4 gamma 0.0
Putative N-terminus
biog2_v2.0_unigene9152 biogeco2 v2.0 248
AutoFact: RING-H2 subgroup RHE protein [Populus tremula x Populus alba] 4.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring-h2 finger protein atl3c 0.0
Internal
biog2_v2.0_unigene9360 biogeco2 v2.0 390
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gb|AAF79432.1|AC025808_14 F18O14.27 [Arabidopsis thaliana] gb|AEE29863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain