Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco2 v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene16573 biogeco2 v2.0 429
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71060, mitochondrial; Flags: Precursor gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Ar 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 0.0
Internal
biog2_v2.0_unigene16682 biogeco2 v2.0 433
AutoFact: AMP deaminase [Arabidopsis thaliana] ref|NP_850294.1| AMP deaminase [Arabidopsis thaliana] sp|O80452.2|AMPD_ARATH RecName: Full=AMP deaminase; Short=AtAMPD; AltName: Full=Protein EMBRYONIC FACTOR 1 gb|AAL07150.1| putative AMP deaminase [Arabidopsis thalia 0.0
FL-Next: sp=Probable AMP deaminase; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: amp deaminase 0.0
Internal
biog2_v2.0_unigene16687 biogeco2 v2.0 309
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
N-terminus
biog2_v2.0_unigene16710 biogeco2 v2.0 441
AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase 0.0
Internal
biog2_v2.0_unigene16777 biogeco2 v2.0 286
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g34830, chloroplastic; Flags: Precursor gb|AEE86426.1| pentatricopeptide repeat-containing protein [Ara 9.94922e-44
Blast2go: pentatricopeptide repeat-containing protein chloroplastic-like 0.0
unknown
biog2_v2.0_unigene17058 biogeco2 v2.0 255
AutoFact: ALG2-interacting protein X [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: alg2-interacting protein x 0.0
Internal
biog2_v2.0_unigene17174 biogeco2 v2.0 433
AutoFact: ubiquitin-like modifier-activating enzyme atg7 [Arabidopsis thaliana] sp|Q94CD5.1|ATG7_ARATH RecName: Full=Ubiquitin-like modifier-activating enzyme atg7; AltName: Full=ATG12-activating enzyme E1 atg7; AltName: Full=Autophagy-related protein 7; Short=AtAP 0.0
FL-Next: sp=Ubiquitin-like modifier-activating enzyme atg7; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitin-like modifier-activating enzyme atg7-like 0.0
C-terminus
biog2_v2.0_unigene17293 biogeco2 v2.0 169
AutoFact: Mitochondrial respiratory chain complexes assembly protein AFG3, putative (EC:3.6.4.3); K08956 AFG3 family protein [EC:3.4.24.-] 0.0
FL-Next: sp=ATP-dependent zinc metalloprotease FTSH 3, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene17364 biogeco2 v2.0 228
AutoFact: ATP-dependent peptidase, putative n=1 Tax=Ricinus communis RepID=B9RIL2_RICCO 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
unknown
biog2_v2.0_unigene17368 biogeco2 v2.0 604
AutoFact: kinesin family member 4/7/21/27 [Arabidopsis thaliana] gb|AED97398.1| kinesin family member 4/7/21/27 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromosome-associated kinesin kif4-like 0.0
Internal
biog2_v2.0_unigene17487 biogeco2 v2.0 207
AutoFact: BY-2 kinesin-like protein 10 [Nicotiana tabacum] 0.0
Blast2go: kinesin-like protein kif2a-like 0.0
Coding
biog2_v2.0_unigene17649 biogeco2 v2.0 785
AutoFact: Carbon catabolite repressor protein 4 homolog 5 n=2 Tax=Arabidopsis RepID=CCR4E_ARATH 0.0
FL-Next: sp=Carbon catabolite repressor protein 4 homolog 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: carbon catabolite repressor protein 4-like 3 0.0
Internal
biog2_v2.0_unigene17690 biogeco2 v2.0 1156
AutoFact: putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group] dbj|BAD30726.1| putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable serine threonine-protein kinase at1g54610-like 0.0
Internal
biog2_v2.0_unigene17878 biogeco2 v2.0 533
AutoFact: Gag and Pol n=1 Tax=Zea mays RepID=Q8LSK0_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal
biog2_v2.0_unigene17954 biogeco2 v2.0 439
AutoFact: diacylglycerol kinase 3 [Arabidopsis thaliana] gb|AAL57635.1| At2g18730/MSF3.11 [Arabidopsis thaliana] gb|AAM98254.1| At2g18730/MSF3.11 [Arabidopsis thaliana] gb|AEC06799.1| diacylglycerol kinase 3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: diacylglycerol kinase 0.0
N-terminus
biog2_v2.0_unigene18031 biogeco2 v2.0 678
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
Putative C-terminus
biog2_v2.0_unigene18071 biogeco2 v2.0 398
AutoFact: transcription factor bHLH76 [Arabidopsis thaliana] gb|AAS79545.1| putative transcription factor [Arabidopsis thaliana] emb|CAG25856.1| hypothetical protein [Arabidopsis thaliana] gb|AEE30669.1| transcription factor bHLH76 [Arabidopsis thaliana] 3.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh76 0.0
C-terminus
biog2_v2.0_unigene18129 biogeco2 v2.0 182
AutoFact: protein kinase-like protein [Arabidopsis thaliana] gb|AAF87863.1|AC022520_7 similar to cdc2 protein kinase [Arabidopsis thaliana] gb|AEE32884.1| protein kinase-like protein [Arabidopsis thaliana] 0.0
Blast2go: probable serine threonine-protein kinase at1g54610-like 0.0
unknown
biog2_v2.0_unigene18134 biogeco2 v2.0 564
AutoFact: CBL-interacting protein kinase 14 n=2 Tax=Vitis vinifera RepID=C4P7W3_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene18192 biogeco2 v2.0 468
AutoFact: putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Callose synthase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: callose synthase 5 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain