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Assembly Name: biogeco2 v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene15409 biogeco2 v2.0 442
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] gb|AED97923.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: aaa-type atpase family protein 0.0
Internal
biog2_v2.0_unigene15510 biogeco2 v2.0 280
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49170, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2261; Flags: Precursor gb|AAW62962.1| emb 4.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 3.82753e-38
Internal
biog2_v2.0_unigene15527 biogeco2 v2.0 415
AutoFact: Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gb|AAG51102.1|AC025295_10 unknown protein [Arabidopsis thaliana] gb|AAK59597.1| unknown protein [Arabidopsis thaliana] gb|AAL34230.1| unknown protein [Arabidopsis thaliana] gb|AE 5.0e-35
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized membrane 1.4013e-44
Internal
biog2_v2.0_unigene15533 biogeco2 v2.0 127
AutoFact: NHL domain-containing protein [Arabidopsis thaliana] gb|AEE35041.1| NHL domain-containing protein [Arabidopsis thaliana] 0.0
Blast2go: nhl repeat-containing protein 0.0
unknown
biog2_v2.0_unigene15537 biogeco2 v2.0 205
AutoFact: pentatricopeptide repeat protein [Oryza sativa Japonica Group] gb|EAZ14485.1| hypothetical protein OsJ_04408 [Oryza sativa Japonica Group] 0.0
Blast2go: os01g67210-like protein 0.0
unknown
biog2_v2.0_unigene15603 biogeco2 v2.0 297
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 5.14515e-28
Internal
biog2_v2.0_unigene15664 biogeco2 v2.0 330
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene15705 biogeco2 v2.0 412
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 4.0e-29
Blast2go: bhlh transcription factor 0.0
Putative coding
biog2_v2.0_unigene15734 biogeco2 v2.0 372
AutoFact: alpha-amylase-like 3 [Arabidopsis thaliana] gb|AAK91414.1| At1g69830/T17F3_14 [Arabidopsis thaliana] gb|AAN18209.1| At1g69830/T17F3_14 [Arabidopsis thaliana] gb|AEE34983.1| alpha-amylase-like 3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: alpha-amylase isozyme 3d 0.0
Internal
biog2_v2.0_unigene15787 biogeco2 v2.0 153
AutoFact: Unassigned protein
FL-Next: sp=Pentatricopeptide repeat-containing protein At3g46870; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene15953 biogeco2 v2.0 409
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71060, mitochondrial; Flags: Precursor gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Ar 8.99998e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein mitochondrial-like 0.0
Putative C-terminus
biog2_v2.0_unigene16078 biogeco2 v2.0 257
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SAK0.1|PP132_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; AltName: Full=Protein EMBRYO DEFECTIVE 2217; Flags: Precursor gb|AAD30226.1|AC00 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene16173 biogeco2 v2.0 424
AutoFact: MATE efflux family protein [Arabidopsis thaliana] sp|Q9SYD6.2|MATE1_ARATH RecName: Full=MATE efflux family protein 1; AltName: Full=Aluminum-activated citrate transporter; AltName: Full=FRD-like protein; AltName: Full=MATE citrate transporter; AltName: Fu 0.0
Blast2go: mate efflux family protein 0.0
unknown
biog2_v2.0_unigene16199 biogeco2 v2.0 461
AutoFact: ATP-dependent peptidase, putative n=1 Tax=Ricinus communis RepID=B9RIL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
Internal
biog2_v2.0_unigene16278 biogeco2 v2.0 465
AutoFact: genomes uncoupled 1 protein [Arabidopsis thaliana] sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gb|AAD26479.1| unknown protein [Arabidopsis thaliana] gb|AEC08542.1| genomes un 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Putative N-terminus
biog2_v2.0_unigene16288 biogeco2 v2.0 208
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene16292 biogeco2 v2.0 569
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
biog2_v2.0_unigene16304 biogeco2 v2.0 360
AutoFact: nodulin MtN3-like protein [Arabidopsis thaliana] sp|Q9LUR4.1|SWT16_ARATH RecName: Full=Bidirectional sugar transporter SWEET16; Short=AtSWEET16 dbj|BAB02761.1| cytochrome c oxidoreductase-like [Arabidopsis thaliana] gb|AAQ65151.1| At3g16690 [Arabidopsis t 6.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nodulin 3-like protein 0.0
N-terminus
biog2_v2.0_unigene16322 biogeco2 v2.0 240
AutoFact: Pectin lyase-like protein [Arabidopsis thaliana] gb|AAB71972.1| putative polygalacturonase [Arabidopsis thaliana] gb|AEE33700.1| Pectin lyase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase at1g48100-like 0.0
Internal
biog2_v2.0_unigene16513 biogeco2 v2.0 72
AutoFact: dsRNA-binding protein [Brassica oleracea var. gongylodes] emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera] 7.00649e-44
Blast2go: dsrna-binding protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain