Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Reverse transcriptase

Term: IPR000477  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene16540 biogeco2 v2.0 505
AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 2.99878e-43
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: mismatch repair endonuclease pms2-like 2.10195e-44
N-terminus
biog2_v2.0_unigene16545 biogeco2 v2.0 403
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
Putative Complete
biog2_v2.0_unigene16619 biogeco2 v2.0 280
AutoFact: myosin XI [Nicotiana tabacum] 0.0
Blast2go: myosin-h heavy chain-like 0.0
unknown
biog2_v2.0_unigene16785 biogeco2 v2.0 423
AutoFact: Nuclear transcription factor Y subunit C-2 n=2 Tax=Arabidopsis RepID=NFYC2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear transcription factor y subunit c-2 0.0
Putative Complete
biog2_v2.0_unigene16983 biogeco2 v2.0 424
AutoFact: HECT; Ubiquitin [Medicago truncatula] 0.0
FL-Next: sp=E3 ubiquitin-protein ligase UPL5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: e3 ubiquitin-protein ligase upl5 0.0
C-terminus
biog2_v2.0_unigene17103 biogeco2 v2.0 479
AutoFact: FPL domain containing protein 7.0e-26
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene17106 biogeco2 v2.0 523
AutoFact: guanine nucleotide-exchange-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: brefeldin a-inhibited guanine nucleotide-exchange protein 1-like 0.0
Internal
biog2_v2.0_unigene17182 biogeco2 v2.0 308
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 0.0
FL-Next: tr=Pol polyprotein; Boechera divaricarpa. 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
Internal
biog2_v2.0_unigene17198 biogeco2 v2.0 490
AutoFact: WS02928.CR_G12 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02928_G12 3', mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene17244 biogeco2 v2.0 429
AutoFact: Apoptosis inhibitory protein 5 (API5) [Arabidopsis thaliana] gb|AAB67622.2| expressed protein [Arabidopsis thaliana] gb|AAM62452.1| unknown [Arabidopsis thaliana] gb|AAN72062.1| expressed protein [Arabidopsis thaliana] gb|AAQ56832.1| At2g34040 [Arabidopsi 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: apoptosis inhibitory protein 5 0.0
Internal
biog2_v2.0_unigene17266 biogeco2 v2.0 564
AutoFact: putative casein kinase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: casein kinase 0.0
Internal
biog2_v2.0_unigene17337 biogeco2 v2.0 526
AutoFact: protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] sp|Q9LYT3.1|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 emb|CAB86931.1| putative protein [Arabidopsis thaliana] emb|C 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transparent testa 12 0.0
C-terminus
biog2_v2.0_unigene17474 biogeco2 v2.0 389
AutoFact: FPL domain containing protein 7.0e-26
FL-Next: tr=Putative uncharacterized protein Sb06g004530; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene17519 biogeco2 v2.0 244
AutoFact: THO complex subunit 1 [Arabidopsis thaliana] gb|AAL11560.1|AF424566_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb|AAL16253.1|AF428323_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb|AED91456.1| THO complex subunit 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: tho complex subunit 1-like 0.0
Internal
biog2_v2.0_unigene17594 biogeco2 v2.0 413
AutoFact: phosphatidylinositol 4-kinase [Solanum tuberosum] 0.0
FL-Next: sp=Phosphatidylinositol 4-kinase beta 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: phosphatidylinositol kinase 0.0
C-terminus
biog2_v2.0_unigene17673 biogeco2 v2.0 457
AutoFact: Apoptosis inhibitory protein 5 (API5) [Arabidopsis thaliana] gb|AAB67622.2| expressed protein [Arabidopsis thaliana] gb|AAM62452.1| unknown [Arabidopsis thaliana] gb|AAN72062.1| expressed protein [Arabidopsis thaliana] gb|AAQ56832.1| At2g34040 [Arabidopsi 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: apoptosis inhibitory protein 5 0.0
Internal
biog2_v2.0_unigene17715 biogeco2 v2.0 543
AutoFact: Transitional endoplasmic reticulum ATPase-like n=3 Tax=Oryza sativa RepID=Q6YUV9_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: p-loop containing ntpase domain-containing protein 0.0
C-terminus
biog2_v2.0_unigene17775 biogeco2 v2.0 695
AutoFact: Cinnamoyl CoA reductase n=7 Tax=Populus RepID=B2Z6Q2_POPTR 0.0
FL-Next: tr=Cinnamoyl-CoA reductase; Pinus taeda (Loblolly pine). 0.0
Blast2go: cinnamoyl reductase 0.0
N-terminus
biog2_v2.0_unigene17989 biogeco2 v2.0 271
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AAN72242.1| At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AEE36064.1| transducin/WD-40 repeat-containing protein [Arab 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
biog2_v2.0_unigene18078 biogeco2 v2.0 479
AutoFact: flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain