Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene9268 biogeco2 v2.0 204
AutoFact: Lysyl-tRNA synthetase (Fragment) n=6 Tax=Magnoliophyta RepID=D7U9T8_VITVI 0.0
FL-Next: sp=Lysyl-tRNA synthetase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: lysyl-trna synthetase 0.0
Internal
biog2_v2.0_unigene9367 biogeco2 v2.0 282
AutoFact: aspartyl-tRNA synthetase [Arabidopsis thaliana] ref|NP_194847.3| aspartyl-tRNA synthetase [Arabidopsis thaliana] emb|CAB79836.1| aspartate--tRNA ligase-like protein [Arabidopsis thaliana] dbj|BAH20270.1| AT4G31180 [Arabidopsis thaliana] gb|AEE85872.1| asp 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aspartyl-trna synthetase 0.0
Putative N-terminus
biog2_v2.0_unigene9855 biogeco2 v2.0 441
AutoFact: Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TK03_PHYPA 0.0
Blast2go: eukaryotic translation initiation factor 5b 0.0
unknown
biog2_v2.0_unigene9857 biogeco2 v2.0 950
AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene10118 biogeco2 v2.0 475
AutoFact: Single-strand binding protein (ISS) [Ostreococcus tauri] emb|CAL50423.1| Single-strand binding protein (ISS) [Ostreococcus tauri] 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: single-strand binding protein 0.0
C-terminus
biog2_v2.0_unigene10342 biogeco2 v2.0 404
AutoFact: kinesin-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene10382 biogeco2 v2.0 343
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 5.0e-30
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 3.90336e-34
unknown
biog2_v2.0_unigene10391 biogeco2 v2.0 579
AutoFact: DNA replication licensing factor MCM5 [Aspergillus niger CBS 513.88] emb|CAK44374.1| unnamed protein product [Aspergillus niger] 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Putative Complete
biog2_v2.0_unigene10496 biogeco2 v2.0 273
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: minichromosome maintenance protein 0.0
Internal
biog2_v2.0_unigene10556 biogeco2 v2.0 521
AutoFact: replication licensing factor MCM7 homologue [Zea mays] emb|CAC44902.1| replication licensing factor MCM7 homologue [Zea mays] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein prolifera 0.0
N-terminus
biog2_v2.0_unigene10559 biogeco2 v2.0 524
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9P2L6_PICSI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase 68-like 0.0
C-terminus
biog2_v2.0_unigene10697 biogeco2 v2.0 978
AutoFact: minichromosomal maintenance factor [Triticum aestivum] 0.0
FL-Next: tr=DNA replication licensing factor MCM2, putative, expressed; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: minichromosome maintenance protein 2 0.0
N-terminus
biog2_v2.0_unigene10767 biogeco2 v2.0 379
AutoFact: DNA replication licensing factor MCM3 homolog 1 n=9 Tax=Poaceae RepID=MCM31_MAIZE 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
Blast2go: dna replication licensing factor mcm3 homolog 1-like 0.0
Internal
biog2_v2.0_unigene10784 biogeco2 v2.0 191
AutoFact: minichromosomal maintenance factor [Triticum aestivum] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: minichromosome maintenance protein 2 0.0
Internal
biog2_v2.0_unigene11027 biogeco2 v2.0 716
AutoFact: kinesin-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
biog2_v2.0_unigene11088 biogeco2 v2.0 248
AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
FL-Next: sp=Asparaginyl-tRNA synthetase, cytoplasmic 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: asparaginyl-trna cytoplasmic 1-like 0.0
Internal
biog2_v2.0_unigene11731 biogeco2 v2.0 291
AutoFact: DNA replication licensing factor MCM5 [Aspergillus niger CBS 513.88] emb|CAK44374.1| unnamed protein product [Aspergillus niger] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
biog2_v2.0_unigene11763 biogeco2 v2.0 473
AutoFact: kinesin-related protein [Gossypium hirsutum] 0.0
Blast2go: kinesin heavy 0.0
Putative coding
biog2_v2.0_unigene11928 biogeco2 v2.0 174
AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
FL-Next: sp=Asparaginyl-tRNA synthetase, cytoplasmic 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: asparaginyl-trna cytoplasmic 1-like 0.0
Internal
biog2_v2.0_unigene12039 biogeco2 v2.0 451
AutoFact: aspartyl-tRNA synthetase [Arabidopsis thaliana] ref|NP_194847.3| aspartyl-tRNA synthetase [Arabidopsis thaliana] emb|CAB79836.1| aspartate--tRNA ligase-like protein [Arabidopsis thaliana] dbj|BAH20270.1| AT4G31180 [Arabidopsis thaliana] gb|AEE85872.1| asp 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aspartyl-trna synthetase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain