Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene5692 biogeco2 v2.0 963
AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s23 0.0
Complete
biog2_v2.0_unigene5719 biogeco2 v2.0 533
AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 1a-like 0.0
Complete
biog2_v2.0_unigene5804 biogeco2 v2.0 754
AutoFact: 30S ribosomal protein S17, putative n=1 Tax=Ricinus communis RepID=B9RQK5_RICCO 9.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 30s ribosomal protein s17 0.0
Complete
biog2_v2.0_unigene5967 biogeco2 v2.0 818
AutoFact: Eukaryotic translation initiation factor 5A 4 n=1 Tax=Picea abies RepID=Q3ZDK5_PICAB 0.0
FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: eukaryotic translation initiation factor 5a isoform iv 0.0
Complete
biog2_v2.0_unigene6186 biogeco2 v2.0 546
AutoFact: RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s23 0.0
Complete
biog2_v2.0_unigene6189 biogeco2 v2.0 1117
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: minichromosome maintenance protein 0.0
Putative C-terminus
biog2_v2.0_unigene6380 biogeco2 v2.0 990
AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s11 0.0
Complete
biog2_v2.0_unigene7030 biogeco2 v2.0 1151
AutoFact: putative replication licensing factor MCM4 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna replication licensing factor mcm4 0.0
Internal
biog2_v2.0_unigene7122 biogeco2 v2.0 474
AutoFact: small subunit ribosomal protein S17 [Arabidopsis thaliana] gb|AAD43160.1|AC007504_15 Putative ribosomal protein [Arabidopsis thaliana] dbj|BAC42717.1| unknown protein [Arabidopsis thaliana] gb|AAO50680.1| putative 40S ribosomal protein S17 [Arabidopsis th 1.0e-33
FL-Next: sp=30S ribosomal protein S17, chloroplastic; Thalassiosira pseudonana (Marine diatom) (Cyclotella nana). Plastid; Chloroplast. 0.0
Blast2go: 30s ribosomal protein s17 2.8026e-45
Complete
biog2_v2.0_unigene7337 biogeco2 v2.0 735
AutoFact: DNA replication licensing factor MCM3 homolog 1 n=9 Tax=Poaceae RepID=MCM31_MAIZE 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
Blast2go: dna replication licensing factor mcm3 homolog 1-like 0.0
C-terminus
biog2_v2.0_unigene7674 biogeco2 v2.0 1023
AutoFact: exoribonuclease-like [Oryza sativa Japonica Group] gb|EEC74235.1| hypothetical protein OsI_09429 [Oryza sativa Indica Group] gb|EEE58039.1| hypothetical protein OsJ_08863 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component csl4 0.0
Complete
biog2_v2.0_unigene7925 biogeco2 v2.0 563
AutoFact: methionyl-tRNA synthetase [Bacteroides fragilis YCH46] ref|ZP_04843858.1| methionyl-tRNA synthetase [Bacteroides sp. 3_2_5] ref|ZP_06094931.1| methionyl-tRNA synthetase [Bacteroides sp. 2_1_16] ref|ZP_08592150.1| methionyl-tRNA synthetase [Bacteroides sp. 2.0e-11
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: methionyl-trna synthetase 0.0
Putative C-terminus
biog2_v2.0_unigene8058 biogeco2 v2.0 554
AutoFact: DUF707 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lysine ketoglutarate reductase trans-splicing related 1 0.0
Putative N-terminus
biog2_v2.0_unigene8119 biogeco2 v2.0 349
AutoFact: minichromosomal maintenance factor [Triticum aestivum] 0.0
Blast2go: minichromosome maintenance protein 2 0.0
unknown
biog2_v2.0_unigene8346 biogeco2 v2.0 810
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Os03g0214100 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
Internal
biog2_v2.0_unigene8348 biogeco2 v2.0 457
AutoFact: replication licensing factor MCM7 homologue [Zea mays] emb|CAC44902.1| replication licensing factor MCM7 homologue [Zea mays] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein prolifera 0.0
Internal
biog2_v2.0_unigene8378 biogeco2 v2.0 362
AutoFact: putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] 7.0e-28
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein rrp5 homolog 9.86014e-33
Internal
biog2_v2.0_unigene8484 biogeco2 v2.0 361
AutoFact: Replication origin activator ROA2 (Fragment) n=2 Tax=Zea mays RepID=Q9XHR1_MAIZE 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
Blast2go: dna replication licensing factor mcm3 homolog 1-like 0.0
N-terminus
biog2_v2.0_unigene8524 biogeco2 v2.0 565
AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] emb|CAB75817.1| putative protein [Arabidopsis thaliana] gb|AAK76594.1| unknown protein [Arabidopsis thaliana] gb|AAM44914.1| unknown protein [Arabidopsis thaliana] gb|AAM63861.1| unknown [A 0.0
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene8987 biogeco2 v2.0 805
AutoFact: methionyl-tRNA synthetase [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methionyl-trna synthetase 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain