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Assembly Name: biogeco2 v2.0

Name: Ribosome-binding factor A

Term: IPR000238  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene10229 biogeco2 v2.0 496
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PT44_PICSI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectinesterase 0.0
Internal
biog2_v2.0_unigene10530 biogeco2 v2.0 684
AutoFact: protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] sp|Q9LYT3.1|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 emb|CAB86931.1| putative protein [Arabidopsis thaliana] emb|C 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transparent testa 12 0.0
Putative N-terminus
biog2_v2.0_unigene10558 biogeco2 v2.0 555
AutoFact: [V] COG0534 Na+-driven multidrug efflux pump 7.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: multidrug resistance 0.0
N-terminus
biog2_v2.0_unigene10587 biogeco2 v2.0 311
AutoFact: [DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rcc1 and btb domain-containing protein 0.0
Internal
biog2_v2.0_unigene10828 biogeco2 v2.0 217
AutoFact: DUF221 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene11618 biogeco2 v2.0 516
AutoFact: early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana] gb|AAG23449.1|AC084165_15 hypothetical protein [Arabidopsis thaliana] dbj|BAF01245.1| hypothetical protein [Arabidopsis thaliana] gb|AEE31435.1| early-responsive to dehydration s 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: early-responsive to dehydration stress protein 0.0
Putative N-terminus
biog2_v2.0_unigene12030 biogeco2 v2.0 330
AutoFact: Unassigned protein
Blast2go: protein early flowering 1.76884e-14
unknown
biog2_v2.0_unigene12530 biogeco2 v2.0 300
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PT44_PICSI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectin methylesterase 0.0
C-terminus
biog2_v2.0_unigene12734 biogeco2 v2.0 508
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
Blast2go: transducin beta-like protein 3-like 0.0
unknown
biog2_v2.0_unigene13926 biogeco2 v2.0 367
AutoFact: Carbohydrate kinase, PfkB [Medicago truncatula] 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene14741 biogeco2 v2.0 306
AutoFact: protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] sp|Q9LYT3.1|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 emb|CAB86931.1| putative protein [Arabidopsis thaliana] emb|C 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transparent testa 12 0.0
Internal
biog2_v2.0_unigene15030 biogeco2 v2.0 423
AutoFact: histidine amino acid transporter [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lysine histidine transporter 1-like 0.0
Internal
biog2_v2.0_unigene15255 biogeco2 v2.0 295
AutoFact: DUF221 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene15300 biogeco2 v2.0 666
AutoFact: Pectinesterase n=3 Tax=Oryza sativa RepID=B9EVS6_ORYSJ 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectinesterase ppe8b precursor 0.0
Internal
biog2_v2.0_unigene15695 biogeco2 v2.0 391
AutoFact: Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9R7N6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein transparent testa 12-like 0.0
Internal
biog2_v2.0_unigene16182 biogeco2 v2.0 576
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NUI7_PICSI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase pectinesterase inhibitor 51-like 0.0
Internal
biog2_v2.0_unigene16322 biogeco2 v2.0 240
AutoFact: Pectin lyase-like protein [Arabidopsis thaliana] gb|AAB71972.1| putative polygalacturonase [Arabidopsis thaliana] gb|AEE33700.1| Pectin lyase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase at1g48100-like 0.0
Internal
biog2_v2.0_unigene16660 biogeco2 v2.0 120
AutoFact: Phosphoenolpyruvate carboxykinase (ATP) [Dokdonia donghaensis MED134] gb|EAQ39883.1| Phosphoenolpyruvate carboxykinase (ATP) [Dokdonia donghaensis MED134] 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: phosphoenolpyruvate carboxykinase 0.0
Internal
biog2_v2.0_unigene16758 biogeco2 v2.0 352
AutoFact: DUF221 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene17099 biogeco2 v2.0 334
AutoFact: Unassigned protein
Blast2go: protein early flowering 1.76884e-14
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain