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Assembly Name: biogeco2 v2.0

Name: Pectin lyase fold

Term: IPR012334  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene241 biogeco2 v2.0 816
AutoFact: Polygalacturonase n=1 Tax=Citrus sinensis RepID=A2IB56_CITSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase 0.0
Internal
biog2_v2.0_unigene305 biogeco2 v2.0 971
AutoFact: Pectin lyase-like protein [Arabidopsis thaliana] gb|AAB71972.1| putative polygalacturonase [Arabidopsis thaliana] gb|AEE33700.1| Pectin lyase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase at1g48100-like 0.0
Putative C-terminus
biog2_v2.0_unigene466 biogeco2 v2.0 523
AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9RKG6_RICCO 0.0
FL-Next: sp=Probable pectinesterase 53; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable pectinesterase 53-like 0.0
N-terminus
biog2_v2.0_unigene543 biogeco2 v2.0 518
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PT44_PICSI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectin methylesterase 0.0
N-terminus
biog2_v2.0_unigene1243 biogeco2 v2.0 384
AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9RKG6_RICCO 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase 53-like 0.0
Internal
biog2_v2.0_unigene1355 biogeco2 v2.0 388
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9TA63_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
Putative C-terminus
biog2_v2.0_unigene1356 biogeco2 v2.0 194
AutoFact: pectate lyase [Arabidopsis thaliana] gb|ACE95182.1| At3g55140 [Arabidopsis thaliana] gb|ACF04806.1| At3g55140 [Arabidopsis thaliana] gb|AEE79344.1| pectate lyase [Arabidopsis thaliana] 0.0
Blast2go: probable pectate lyase 4-like 0.0
unknown
biog2_v2.0_unigene1398 biogeco2 v2.0 625
AutoFact: pectate lyase [Prunus persica] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 0.0
N-terminus
biog2_v2.0_unigene2096 biogeco2 v2.0 1375
AutoFact: Pectin lyase-like protein n=2 Tax=Arabidopsis RepID=Q9CAL5_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase 0.0
N-terminus
biog2_v2.0_unigene2119 biogeco2 v2.0 584
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RR75_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
Putative C-terminus
biog2_v2.0_unigene2422 biogeco2 v2.0 154
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PT44_PICSI 0.0
Blast2go: pectin methylesterase 0.0
unknown
biog2_v2.0_unigene2462 biogeco2 v2.0 1832
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NUI7_PICSI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase pectinesterase inhibitor 51-like 0.0
Putative Complete
biog2_v2.0_unigene3032 biogeco2 v2.0 891
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=C0PT44_PICSI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectin methylesterase 0.0
Internal
biog2_v2.0_unigene3441 biogeco2 v2.0 654
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RCG6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
Internal
biog2_v2.0_unigene3679 biogeco2 v2.0 893
AutoFact: pectate lyase [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 0.0
Internal
biog2_v2.0_unigene4196 biogeco2 v2.0 746
AutoFact: polygalacturonase [Arabidopsis thaliana] sp|Q949Z1.1|PGLR4_ARATH RecName: Full=Polygalacturonase At1g48100; Short=PG; AltName: Full=Pectinase At1g48100; Flags: Precursor gb|AAK92733.1| putative polygalacturonase PG1 [Arabidopsis thaliana] gb|AAM20001.1| p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase at1g48100-like 0.0
Putative C-terminus
biog2_v2.0_unigene4590 biogeco2 v2.0 1538
AutoFact: pectate lyase [Arabidopsis thaliana] gb|ACE95182.1| At3g55140 [Arabidopsis thaliana] gb|ACF04806.1| At3g55140 [Arabidopsis thaliana] gb|AEE79344.1| pectate lyase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectate lyase 4-like 0.0
Complete
biog2_v2.0_unigene4788 biogeco2 v2.0 639
AutoFact: Pectinesterase n=2 Tax=Malpighiales RepID=B9H3W4_POPTR 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectinesterase 0.0
C-terminus
biog2_v2.0_unigene5324 biogeco2 v2.0 1903
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectin methylesterase 0.0
Complete
biog2_v2.0_unigene5818 biogeco2 v2.0 1047
AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9SAU4_RICCO 0.0
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectinesterase pectinesterase inhibitor 40-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain