Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene9797 biogeco2 v2.0 328
• AutoFact: Armadillo/beta-catenin repeat protein-like n=2 Tax=Oryza sativa RepID=Q6Z6H7_ORYSJ 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene9892 biogeco2 v2.0 414
• AutoFact: cellulose synthase 6 [Eucalyptus grandis] 0.0
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Blast2go: family 2 glycosyltransferase 0.0
Internal
biog2_v2.0_unigene9958 biogeco2 v2.0 429
• AutoFact: PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI00019843BD 0.0
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: atp-dependent helicase rhp16-like 0.0
Internal
biog2_v2.0_unigene10226 biogeco2 v2.0 425
• AutoFact: pfam12819, Malectin_like, Carbohydrate-binding protein of the ER 3.0e-28
• FL-Next: sp=Receptor-like protein kinase THESEUS 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: receptor-like protein kinase theseus 1-like 0.0
Internal
biog2_v2.0_unigene10287 biogeco2 v2.0 568
• AutoFact: Os08g0451800 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0J5A1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable e3 ubiquitin-protein ligase rnf144a-like 0.0
C-terminus
biog2_v2.0_unigene10345 biogeco2 v2.0 529
• AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
• FL-Next: Isoform 2 of ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM 0.0
• Blast2go: atp-dependent helicase brm-like 0.0
Internal
biog2_v2.0_unigene10420 biogeco2 v2.0 636
• AutoFact: cellulose synthase 6 [Eucalyptus grandis] 0.0
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Blast2go: family 2 glycosyltransferase 0.0
Internal
biog2_v2.0_unigene10620 biogeco2 v2.0 506
• AutoFact: e-cadherin binding protein-like protein [Arabidopsis thaliana] emb|CAB69844.1| putative protein [Arabidopsis thaliana] gb|ABD59082.1| At5g01160 [Arabidopsis thaliana] dbj|BAE99278.1| hypothetical protein [Arabidopsis thaliana] gb|AED90305.1| e-cadherin bi 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
• Blast2go: protein 1.71659e-42
Putative N-terminus
biog2_v2.0_unigene10642 biogeco2 v2.0 385
• AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9T6X0_RICCO 0.0
• Blast2go: ring-h2 finger protein atl13 0.0
Putative coding
biog2_v2.0_unigene10723 biogeco2 v2.0 347
• AutoFact: putative E3 ubiquitin-protein ligase BAH1-like protein [Arabidopsis thaliana] sp|Q8GW10.1|BAH1L_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase BAH1-like; AltName: Full=RING finger protein 178 dbj|BAC43727.1| unknown protein [Arabidopsis thaliana 0.0
• Blast2go: e3 ubiquitin-protein ligase bah1-like protein 0.0
unknown
biog2_v2.0_unigene10770 biogeco2 v2.0 238
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974453.1| RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974454.1| RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001190122.1| RING/U-box domain-con 3.0e-26
• Blast2go: zinc c3hc4 type family protein 0.0
unknown
biog2_v2.0_unigene10828 biogeco2 v2.0 217
• AutoFact: DUF221 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog2_v2.0_unigene11602 biogeco2 v2.0 209
• AutoFact: YDG_SRA multi-domain protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger 0.0
Internal
biog2_v2.0_unigene11645 biogeco2 v2.0 300
• AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
• FL-Next: sp=E3 ubiquitin-protein ligase BRE1-like 2; Oryza sativa subsp. japonica (Rice). 0.0
Internal
biog2_v2.0_unigene11648 biogeco2 v2.0 366
• AutoFact: Glycosyltransferase, CAZy family GT2 n=5 Tax=rosids RepID=B9N113_POPTR 0.0
• Blast2go: cellulose synthase-like protein 0.0
unknown
biog2_v2.0_unigene11801 biogeco2 v2.0 490
• AutoFact: Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA 0.0
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Blast2go: cellulose synthase a catalytic subunit 3 0.0
C-terminus
biog2_v2.0_unigene11845 biogeco2 v2.0 664
• AutoFact: pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: abscisic acid receptor pyl4 0.0
Complete
biog2_v2.0_unigene12058 biogeco2 v2.0 288
• AutoFact: [R] COG2319 FOG: WD40 repeat 0.0001
• Blast2go: photomorphogenesis repressor protein 0.0
unknown
biog2_v2.0_unigene12075 biogeco2 v2.0 480
• AutoFact: Putative copine I (Fragment) n=1 Tax=Picea abies RepID=B2KZG6_PICAB 0.0
• Blast2go: e3 ubiquitin-protein ligase rglg2-like 0.0
unknown
biog2_v2.0_unigene12108 biogeco2 v2.0 199
• AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-16
• Blast2go: helicase and zinc finger domain-containing protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain