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Assembly Name: biogeco2 v2.0

Name: WD40/YVTN repeat-like-containing domain

Term: IPR015943  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene1462 biogeco2 v2.0 871
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S411_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd40 repeat compass complex protein 0.0
Internal
biog2_v2.0_unigene1524 biogeco2 v2.0 512
AutoFact: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Arabidopsis thaliana] sp|O22212.1|PRP4_ARATH RecName: Full=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; AltName: Full=Protein EMBRYO DEFECTIVE 2776 gb|AAB84332.1| putative small nuclear 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein prp4-like 0.0
Putative N-terminus
biog2_v2.0_unigene1614 biogeco2 v2.0 234
AutoFact: Nucleosome/chromatin assembly factor group n=7 Tax=core eudicotyledons RepID=A9PHH9_POPTR 0.0
Blast2go: multicopy suppressor of ira1 0.0
unknown
biog2_v2.0_unigene1661 biogeco2 v2.0 327
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB02026.1| unnamed protein product [Arabidopsis thaliana] gb|AAM65008.1| WD-repeat protein, putative [Arabidopsis thaliana] gb|AAN86145.1| putative WD-repeat protein [Arabidopsis thalia 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein lst8 homolog 0.0
C-terminus
biog2_v2.0_unigene1792 biogeco2 v2.0 1264
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SRX4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
biog2_v2.0_unigene1907 biogeco2 v2.0 580
AutoFact: cellulose synthase 6 [Populus tremuloides] 0.0
Blast2go: cellulose synthase 0.0
unknown
biog2_v2.0_unigene1967 biogeco2 v2.0 461
AutoFact: coatomer subunit beta'-2 [Arabidopsis thaliana] sp|Q9C827.1|COB22_ARATH RecName: Full=Coatomer subunit beta'-2; AltName: Full=Beta'-coat protein 2; Short=Beta'-COP 2 gb|AAG51545.1|AC037424_10 coatomer complex subunit, putative; 33791-27676 [Arabidopsis th 0.0
FL-Next: Isoform 2 of Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 0.0
Internal
biog2_v2.0_unigene1992 biogeco2 v2.0 688
AutoFact: elongator complex protein 1 [Arabidopsis thaliana] dbj|BAB08695.1| unnamed protein product [Arabidopsis thaliana] gb|AED91927.1| elongator complex protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: elongator complex protein 1 0.0
N-terminus
biog2_v2.0_unigene2175 biogeco2 v2.0 800
AutoFact: WD40 repeat protein (ISS) [Ostreococcus tauri] emb|CAL54822.1| WD40 repeat protein (ISS) [Ostreococcus tauri] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: quinoprotein amine beta chain-like ric1-like guanyl-nucleotide exchange factor 0.0
C-terminus
biog2_v2.0_unigene2205 biogeco2 v2.0 429
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAQ89634.1| At1g14020 [Arabidopsis thaliana] dbj|BAF01665.1| growth regulator like protein [Arabidopsis thaliana] dbj|BAF01818.1| growth regulator like protein [Arabidopsis thaliana] gb|AEE2909 1.0e-14
Blast2go: protein 1.35613e-15
unknown
biog2_v2.0_unigene2210 biogeco2 v2.0 560
AutoFact: RecName: Full=Vacuolar protein sorting-associated protein 41 homolog gb|AAB60857.1| VPS41 [Solanum lycopersicum] 0.0
FL-Next: sp=Vacuolar protein sorting-associated protein 41 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: vacuolar protein sorting-associated protein 41 homolog 0.0
C-terminus
biog2_v2.0_unigene2276 biogeco2 v2.0 370
AutoFact: Tyrosyl-tRNA synthetase n=3 Tax=Zea mays RepID=B6T638_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: tyrosyl-trna synthetase 0.0
N-terminus
biog2_v2.0_unigene2339 biogeco2 v2.0 154
AutoFact: Guanine nucleotide-binding protein subunit beta-like protein n=4 Tax=rosids RepID=GBLP_SOYBN 0.0
Blast2go: receptor of activated protein kinase c component of 40s small ribosomal subunit 0.0
unknown
biog2_v2.0_unigene2370 biogeco2 v2.0 443
AutoFact: phospholipase A-2-activating protein [Arabidopsis thaliana] gb|AAK95297.1|AF410311_1 AT3g18860/MCB22_3 [Arabidopsis thaliana] dbj|BAB03095.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76160.1| phospholipase A-2-activating protein [Arabidopsis t 0.0
Blast2go: phospholipase a-2-activating protein 0.0
unknown
biog2_v2.0_unigene2371 biogeco2 v2.0 258
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene2381 biogeco2 v2.0 348
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB11582.1| unnamed protein product [Arabidopsis thaliana] gb|AED96466.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 44-like 0.0
Internal
biog2_v2.0_unigene2394 biogeco2 v2.0 784
AutoFact: Pre-mRNA-processing factor 19 [Arabidopsis thaliana] sp|Q94BR4.1|PR19A_ARATH RecName: Full=Pre-mRNA-processing factor 19 homolog 1; AltName: Full=MOS4-associated complex protein 3A; Short=MAC protein 3A; AltName: Full=Plant U-box protein 59; AltName: Full 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-protein pub59 0.0
C-terminus
biog2_v2.0_unigene2548 biogeco2 v2.0 630
AutoFact: cellulose synthase 6 [Populus tremuloides] 0.0
Blast2go: cellulose synthase 0.0
unknown
biog2_v2.0_unigene2588 biogeco2 v2.0 393
AutoFact: MIP-T3 multi-domain protein 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: f-box-like wd repeat-containing protein tbl1xr1-like 0.0
N-terminus
biog2_v2.0_unigene2730 biogeco2 v2.0 1815
AutoFact: FVE n=2 Tax=Papilionoideae RepID=Q52ZH8_PEA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain