Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: WD40/YVTN repeat-like-containing domain

Term: IPR015943  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene16057 biogeco2 v2.0 416
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SED3_RICCO 0.0
FL-Next: sp=Tryptophan aminotransferase-related protein 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: tryptophan aminotransferase-related protein 4-like 0.0
N-terminus
biog2_v2.0_unigene16082 biogeco2 v2.0 282
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|ACI46510.1| At5g11240 [Arabidopsis thaliana] gb|AED91651.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
Blast2go: wd40 repeat-containing protein smu1 0.0
Putative coding
biog2_v2.0_unigene16141 biogeco2 v2.0 256
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SED3_RICCO 0.0
Blast2go: tryptophan aminotransferase-related protein 4-like 0.0
unknown
biog2_v2.0_unigene16150 biogeco2 v2.0 500
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AEC06823.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: wd repeat-containing protein 75-like 0.0
Putative C-terminus
biog2_v2.0_unigene16222 biogeco2 v2.0 148
AutoFact: Unassigned protein
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene16223 biogeco2 v2.0 337
AutoFact: STYLOSA protein n=1 Tax=Antirrhinum majus RepID=Q6H976_ANTMA 5.0e-38
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transcriptional corepressor leunig-like isoform 2 2.56438e-43
Internal
biog2_v2.0_unigene16236 biogeco2 v2.0 301
AutoFact: phospholipase A-2-activating protein [Arabidopsis thaliana] gb|AAK95297.1|AF410311_1 AT3g18860/MCB22_3 [Arabidopsis thaliana] dbj|BAB03095.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76160.1| phospholipase A-2-activating protein [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phospholipase a-2-activating protein 0.0
Internal
biog2_v2.0_unigene16362 biogeco2 v2.0 286
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] ref|NP_175682.2| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAD55591.1|AC008016_1 Similar to gb|AJ010025 unr-interacting protein from Homo sapiens and contains 3 P 0.0
Blast2go: serine-threonine kinase receptor-associated 0.0
unknown
biog2_v2.0_unigene16441 biogeco2 v2.0 450
AutoFact: similar to beta-transducins (Pfam: PF00400, Score=71.7, E=1.5e-17, N=6) [Arabidopsis thaliana] emb|CAB81036.1| putative WD-repeat membrane protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd-repeat membrane protein 0.0
Internal
biog2_v2.0_unigene16508 biogeco2 v2.0 275
AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 0.0
FL-Next: sp=Coatomer subunit alpha-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
biog2_v2.0_unigene16603 biogeco2 v2.0 442
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAN13056.1| unknown protein [Arabidopsis thaliana] gb|AEE84462.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=WD-repeat protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: guanine nucleotide-binding protein 0.0
Internal
biog2_v2.0_unigene16742 biogeco2 v2.0 345
AutoFact: eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana] gb|AAG52134.1|AC010556_16 unknown protein; 49372-46275 [Arabidopsis thaliana] gb|AAL07151.1| unknown protein [Arabidopsis thaliana] gb|AAM14246.1| unknown protein [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 2a 0.0
Internal
biog2_v2.0_unigene16809 biogeco2 v2.0 340
AutoFact: cellulose synthase 6 [Populus tremuloides] 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase 0.0
C-terminus
biog2_v2.0_unigene17019 biogeco2 v2.0 283
AutoFact: Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform n=3 Tax=rosids RepID=Q9FVD4_MEDSV 0.0
FL-Next: sp=Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: serine threonine protein phosphatase 2a 55 kda regulatory subunit b beta isoform-like 0.0
Internal
biog2_v2.0_unigene17238 biogeco2 v2.0 462
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB02018.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAL32514.1| WD40-repeat protein [Arabidopsis thaliana] gb|AAM47943.1| WD40-repeat protein [Arabidopsis thaliana] gb|AEE76041.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 66 kda stress protein 0.0
Putative C-terminus
biog2_v2.0_unigene17250 biogeco2 v2.0 282
AutoFact: eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana] gb|AAG52134.1|AC010556_16 unknown protein; 49372-46275 [Arabidopsis thaliana] gb|AAL07151.1| unknown protein [Arabidopsis thaliana] gb|AAM14246.1| unknown protein [Arabidop 0.0
Blast2go: eukaryotic translation initiation factor 2a 0.0
unknown
biog2_v2.0_unigene17306 biogeco2 v2.0 365
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDD1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
biog2_v2.0_unigene17495 biogeco2 v2.0 577
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAF76355.1| hypothetical protein [Arabidopsis thaliana] gb|AAO42310.1| unknown protein [Arabidopsis thaliana] gb|AAP04120.1| unknown protein [Arabidopsis thaliana] gb|AEE74922.1| transduc 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: probable u3 small nucleolar rna-associated protein 7-like 0.0
N-terminus
biog2_v2.0_unigene17644 biogeco2 v2.0 341
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-07
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: wd repeat-containing 0.0
Internal
biog2_v2.0_unigene17676 biogeco2 v2.0 344
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAC41980.1| unknown protein [Arabidopsis thaliana] gb|AAO64896.1| At4g34280 [Arabidopsis thaliana] gb|AEE86354.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain