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Assembly Name: biogeco2 v2.0

Name: WD40/YVTN repeat-like-containing domain

Term: IPR015943  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene14623 biogeco2 v2.0 127
AutoFact: [R] COG2319 FOG: WD40 repeat 1.0e-11
Blast2go: protein 2.92502e-31
unknown
biog2_v2.0_unigene14682 biogeco2 v2.0 265
AutoFact: Cleavage stimulation factor 50 n=4 Tax=Arabidopsis RepID=Q8L4J2_ARATH 8.0e-11
FL-Next: tr=Cleavage stimulation factor 50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cleavage stimulation factor 50k chain 3.0638e-12
Putative N-terminus
biog2_v2.0_unigene14698 biogeco2 v2.0 254
AutoFact: WD-repeat protein, putative 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene14832 biogeco2 v2.0 348
AutoFact: pfam00400, WD40, WD domain, G-beta repeat 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Internal
biog2_v2.0_unigene14903 biogeco2 v2.0 503
AutoFact: Unassigned protein
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
biog2_v2.0_unigene15088 biogeco2 v2.0 552
AutoFact: enhancer of mRNA-decapping protein 4 [Arabidopsis thaliana] gb|AEE75331.1| enhancer of mRNA-decapping protein 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: enhancer of mrna-decapping protein 4 0.0
Internal
biog2_v2.0_unigene15163 biogeco2 v2.0 567
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-07
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: wd repeat-containing 0.0
Internal
biog2_v2.0_unigene15180 biogeco2 v2.0 465
AutoFact: Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3 [Arabidopsis thaliana] sp|Q84W55.2|IP5P4_ARATH RecName: Full=Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3; AltName: Full=Protein FRAGILE FIBER 3 gb|AAV87313.1| type II inositol polyphospha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: endonuclease exonuclease phosphatase family protein 0.0
Internal
biog2_v2.0_unigene15182 biogeco2 v2.0 181
AutoFact: Guanine nucleotide-binding protein subunit beta-1 n=9 Tax=core eudicotyledons RepID=GBB1_TOBAC 0.0
Blast2go: g protein beta subunit 0.0
unknown
biog2_v2.0_unigene15186 biogeco2 v2.0 277
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SED3_RICCO 0.0
FL-Next: sp=Tryptophan aminotransferase-related protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: tryptophan aminotransferase-related protein 4-like 0.0
Internal
biog2_v2.0_unigene15227 biogeco2 v2.0 129
AutoFact: MSI type nucleosome/chromatin assembly factor C [Zea mays] gb|AAL33648.1|AF440219_1 MSI type nucleosome/chromatin assembly factor C [Zea mays] gb|ACN33308.1| unknown [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
Internal
biog2_v2.0_unigene15381 biogeco2 v2.0 416
AutoFact: WD-repeat protein GhTTG2 [Gossypium hirsutum] gb|AAM95644.1| WD-repeat protein GhTTG2 [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene15535 biogeco2 v2.0 425
AutoFact: contains region of similarity to beta transducin family [Arabidopsis thaliana] emb|CAB80889.1| AT4g00800 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: vacuolar protein sorting-associated protein 8 homolog 0.0
Internal
biog2_v2.0_unigene15577 biogeco2 v2.0 645
AutoFact: WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK32933.1|AF367346_1 At2g20330/F11A3.12 [Arabidopsis thaliana] gb|AAL16252.1|AF428322_1 At2g20330/F11A3.12 [Arabidopsis thaliana] gb|AAD21755.1| putative WD-40 repeat protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 70-like 0.0
N-terminus
biog2_v2.0_unigene15594 biogeco2 v2.0 635
AutoFact: Pre-mRNA splicing factor n=1 Tax=Cucumis melo subsp. melo RepID=E5GBJ7_CUCME 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pre-mrna-processing factor 17-like 0.0
N-terminus
biog2_v2.0_unigene15602 biogeco2 v2.0 161
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] ref|NP_001189878.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK82560.1| AT3g13340/MDC11_13 [Arabidopsis thaliana] gb|AAM98109.1| At3g13340/MDC11_13 [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene15817 biogeco2 v2.0 305
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK92820.1| unknown protein [Arabidopsis thaliana] gb|AAL08286.1| AT4g18900/F13C5_70 [Arabidopsis thaliana] gb|AAM44990.1| unknown protein [Arabidopsis thaliana] gb|AEE84104.1| transducin 0.0
Blast2go: transducin wd40 domain-containing protein 0.0
Putative coding
biog2_v2.0_unigene15925 biogeco2 v2.0 92
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAK50091.1|AF372951_1 At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AAN72242.1| At1g78070/F28K19_28 [Arabidopsis thaliana] gb|AEE36064.1| transducin/WD-40 repeat-containing protein [Arab 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene15973 biogeco2 v2.0 352
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RWJ4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcriptional corepressor leunig 0.0
Complete
biog2_v2.0_unigene16007 biogeco2 v2.0 303
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9T0P2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ring finger and transmembrane domain-containing protein 2-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain