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Assembly Name: biogeco2 v2.0

Name: Parallel beta-helix repeat

Term: IPR006626  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene241 biogeco2 v2.0 816
AutoFact: Polygalacturonase n=1 Tax=Citrus sinensis RepID=A2IB56_CITSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase 0.0
Internal
biog2_v2.0_unigene305 biogeco2 v2.0 971
AutoFact: Pectin lyase-like protein [Arabidopsis thaliana] gb|AAB71972.1| putative polygalacturonase [Arabidopsis thaliana] gb|AEE33700.1| Pectin lyase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase at1g48100-like 0.0
Putative C-terminus
biog2_v2.0_unigene685 biogeco2 v2.0 759
AutoFact: Glucose-1-phosphate adenylyltransferase n=3 Tax=Selaginella moellendorffii RepID=D8RB04_SELML 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene1355 biogeco2 v2.0 388
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9TA63_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
Putative C-terminus
biog2_v2.0_unigene1356 biogeco2 v2.0 194
AutoFact: pectate lyase [Arabidopsis thaliana] gb|ACE95182.1| At3g55140 [Arabidopsis thaliana] gb|ACF04806.1| At3g55140 [Arabidopsis thaliana] gb|AEE79344.1| pectate lyase [Arabidopsis thaliana] 0.0
Blast2go: probable pectate lyase 4-like 0.0
unknown
biog2_v2.0_unigene1398 biogeco2 v2.0 625
AutoFact: pectate lyase [Prunus persica] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 0.0
N-terminus
biog2_v2.0_unigene1823 biogeco2 v2.0 584
AutoFact: Putative p23 co-chaperone n=1 Tax=Cryptomeria japonica RepID=Q1XG56_CRYJA 3.00018e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein _027940-like 0.0
N-terminus
biog2_v2.0_unigene2096 biogeco2 v2.0 1375
AutoFact: Pectin lyase-like protein n=2 Tax=Arabidopsis RepID=Q9CAL5_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase 0.0
N-terminus
biog2_v2.0_unigene2119 biogeco2 v2.0 584
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RR75_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
Putative C-terminus
biog2_v2.0_unigene3441 biogeco2 v2.0 654
AutoFact: Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RCG6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable polygalacturonase-like 0.0
Internal
biog2_v2.0_unigene3679 biogeco2 v2.0 893
AutoFact: pectate lyase [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 0.0
Internal
biog2_v2.0_unigene4196 biogeco2 v2.0 746
AutoFact: polygalacturonase [Arabidopsis thaliana] sp|Q949Z1.1|PGLR4_ARATH RecName: Full=Polygalacturonase At1g48100; Short=PG; AltName: Full=Pectinase At1g48100; Flags: Precursor gb|AAK92733.1| putative polygalacturonase PG1 [Arabidopsis thaliana] gb|AAM20001.1| p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polygalacturonase at1g48100-like 0.0
Putative C-terminus
biog2_v2.0_unigene4590 biogeco2 v2.0 1538
AutoFact: pectate lyase [Arabidopsis thaliana] gb|ACE95182.1| At3g55140 [Arabidopsis thaliana] gb|ACF04806.1| At3g55140 [Arabidopsis thaliana] gb|AEE79344.1| pectate lyase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pectate lyase 4-like 0.0
Complete
biog2_v2.0_unigene5148 biogeco2 v2.0 1136
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 3.9937e-43
Blast2go: dna-directed rna polymerase 0.0
Coding
biog2_v2.0_unigene5868 biogeco2 v2.0 754
AutoFact: pectate lyase [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 0.0
N-terminus
biog2_v2.0_unigene5961 biogeco2 v2.0 1985
AutoFact: flocculin [Trichomonas vaginalis G3] gb|EAX95321.1| flocculin, putative [Trichomonas vaginalis G3] 1.0e-13
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
biog2_v2.0_unigene6071 biogeco2 v2.0 1913
AutoFact: Pectate lyase n=1 Tax=Dianthus caryophyllus RepID=D4QD73_DIACA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 0.0
Complete
biog2_v2.0_unigene6098 biogeco2 v2.0 320
AutoFact: Pectase lyase n=2 Tax=Prunus persica RepID=D4NXR8_PRUPE 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pectate lyase 1.53512e-31
Internal
biog2_v2.0_unigene7251 biogeco2 v2.0 631
AutoFact: Predicted protein n=11 Tax=Physcomitrella patens RepID=A9S6L2_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene7363 biogeco2 v2.0 421
AutoFact: Putative p23 co-chaperone n=1 Tax=Cryptomeria japonica RepID=Q1XG56_CRYJA 3.00018e-42
Blast2go: uncharacterized protein _027940-like 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain