Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene12422 biogeco2 v2.0 238
AutoFact: RNA-binding protein-like [Oryza sativa Japonica Group] gb|EEE69405.1| hypothetical protein OsJ_28765 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=RanBP2-type zinc finger protein At1g67325; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
Internal
biog2_v2.0_unigene12535 biogeco2 v2.0 204
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 8.90714e-37
Internal
biog2_v2.0_unigene12566 biogeco2 v2.0 319
AutoFact: RHO guanyl-nucleotide exchange factor 7 [Arabidopsis thaliana] emb|CAB82974.1| putative protein [Arabidopsis thaliana] gb|AAU94394.1| At5g02010 [Arabidopsis thaliana] gb|AAV59279.1| At5g02010 [Arabidopsis thaliana] gb|AED90419.1| RHO guanyl-nucleotide exc 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene12578 biogeco2 v2.0 575
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 53; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna binding 0.0
Internal
biog2_v2.0_unigene12667 biogeco2 v2.0 244
AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
Putative C-terminus
biog2_v2.0_unigene12716 biogeco2 v2.0 241
AutoFact: Gly_rich multi-domain protein 1.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: zinc finger protein 0.0
C-terminus
biog2_v2.0_unigene12825 biogeco2 v2.0 308
AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
unknown
biog2_v2.0_unigene13056 biogeco2 v2.0 104
AutoFact: putative beta-1,3-galactosyltransferase 9 [Arabidopsis thaliana] sp|Q5XEZ1.1|B3GT9_ARATH RecName: Full=Probable beta-1,3-galactosyltransferase 9 gb|AAU94388.1| At2g25300 [Arabidopsis thaliana] gb|AAW50705.1| At2g25300 [Arabidopsis thaliana] gb|AEC07684.1| 0.0
Blast2go: transferring glycosyl groups 0.0
unknown
biog2_v2.0_unigene13085 biogeco2 v2.0 344
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif -containing protein 0.0
C-terminus
biog2_v2.0_unigene13215 biogeco2 v2.0 449
AutoFact: MEI2-like protein 5 [Arabidopsis thaliana] ref|NP_849727.1| MEI2-like protein 5 [Arabidopsis thaliana] sp|Q8VWF5.1|AML5_ARATH RecName: Full=Protein MEI2-like 5; Short=AML5; AltName: Full=MEI2-like protein 5 gb|AAL32691.1| RNA-binding protein MEI2, putativ 0.0
Blast2go: protein mei2-like 4-like 0.0
unknown
biog2_v2.0_unigene13289 biogeco2 v2.0 255
AutoFact: tobacco nucleolin [Nicotiana tabacum] 9.99995e-41
Blast2go: rna-binding protein 1.68156e-44
unknown
biog2_v2.0_unigene13297 biogeco2 v2.0 132
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna binding 0.0
Internal
biog2_v2.0_unigene13322 biogeco2 v2.0 320
AutoFact: Os01g0367300 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JJM4_ORYSJ 7.0e-19
Blast2go: copper ion binding 3.29634e-21
Coding
biog2_v2.0_unigene13400 biogeco2 v2.0 463
AutoFact: MEI2-like protein 5 [Arabidopsis thaliana] ref|NP_849727.1| MEI2-like protein 5 [Arabidopsis thaliana] sp|Q8VWF5.1|AML5_ARATH RecName: Full=Protein MEI2-like 5; Short=AML5; AltName: Full=MEI2-like protein 5 gb|AAL32691.1| RNA-binding protein MEI2, putativ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein mei2-like 2-like 0.0
Internal
biog2_v2.0_unigene13520 biogeco2 v2.0 418
AutoFact: splicing factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp31-like 0.0
Putative Complete
biog2_v2.0_unigene13544 biogeco2 v2.0 542
AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB09056.1| unnamed protein product [Arabidopsis thaliana] gb|AAL86001.1| unknown protein [Arabidopsis thaliana] gb|AAM45065.1| unknown protein [Arab 0.0
Blast2go: ras-gtpase-activating protein-binding 0.0
unknown
biog2_v2.0_unigene13625 biogeco2 v2.0 457
AutoFact: hercules receptor kinase 2 [Arabidopsis thaliana] sp|Q9SA72.1|Y1357_ARATH RecName: Full=Probable receptor-like protein kinase At1g30570; Flags: Precursor gb|AAD25744.1|AC007060_2 Contains eukaryotic protein kinase domain PF|00069 [Arabidopsis thaliana] gb 0.0
FL-Next: sp=Receptor-like protein kinase HERK 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable receptor-like protein kinase at1g30570-like 0.0
C-terminus
biog2_v2.0_unigene13633 biogeco2 v2.0 216
AutoFact: putative splicing factor [Arabidopsis thaliana] 0.0
Blast2go: rna-binding protein 39-like 0.0
Putative coding
biog2_v2.0_unigene13636 biogeco2 v2.0 310
AutoFact: RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene13649 biogeco2 v2.0 160
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RUQ0_RICCO 3.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain