Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene8936 biogeco2 v2.0 316
• AutoFact: Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SNG9_RICCO 0.0
• Blast2go: receptor protein 0.0
unknown
biog2_v2.0_unigene9002 biogeco2 v2.0 646
• AutoFact: glycine-rich RNA-binding protein [Physcomitrella patens] 5.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative Complete
biog2_v2.0_unigene9035 biogeco2 v2.0 464
• AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
Internal
biog2_v2.0_unigene9106 biogeco2 v2.0 679
• AutoFact: HIV Tat-specific factor 1 [Arabidopsis thaliana] emb|CAC01867.1| putative protein [Arabidopsis thaliana] gb|AAY25436.1| At5g16260 [Arabidopsis thaliana] dbj|BAF01062.1| hypothetical protein [Arabidopsis thaliana] gb|AED92266.1| HIV Tat-specific factor 1 [ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hiv tat-specific factor 1 homolog 0.0
N-terminus
biog2_v2.0_unigene9247 biogeco2 v2.0 80
• AutoFact: transmembrane protein 14C [Arabidopsis thaliana] gb|AAK91438.1| AT3g43520/T18D12_90 [Arabidopsis thaliana] gb|AAN18102.1| At3g43520/T18D12_90 [Arabidopsis thaliana] gb|AEE77802.1| transmembrane protein 14C [Arabidopsis thaliana] 9.0e-17
• Blast2go: protein 0.0
unknown
biog2_v2.0_unigene9364 biogeco2 v2.0 315
• AutoFact: putative DNA binding protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding post-transcriptional regulator csx1-like 0.0
Internal
biog2_v2.0_unigene9412 biogeco2 v2.0 324
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
• Blast2go: protein 0.0
unknown
biog2_v2.0_unigene9518 biogeco2 v2.0 619
• AutoFact: Unassigned protein
• Blast2go: protein 0.0
unknown
biog2_v2.0_unigene9534 biogeco2 v2.0 362
• AutoFact: DNA-damage-repair/toleration protein DRT111 [Arabidopsis thaliana] sp|P42698.2|DR111_ARATH RecName: Full=DNA-damage-repair/toleration protein DRT111, chloroplastic; Flags: Precursor gb|AAF19751.1|AC009917_10 Strong similarity to gi|1169200 DNA-Damage-Repa 0.0
• FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna-damage-repair toleration protein drt111 0.0
Putative C-terminus
biog2_v2.0_unigene9589 biogeco2 v2.0 1031
• AutoFact: 60S ribosomal protein L23A n=1 Tax=Fritillaria agrestis RepID=RL23A_FRIAG 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 60s ribosomal protein l23a-like 0.0
Complete
biog2_v2.0_unigene9599 biogeco2 v2.0 444
• AutoFact: Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RNK5_RICCO 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene9643 biogeco2 v2.0 340
• AutoFact: Homeobox transcription factor n=1 Tax=Jatropha curcas RepID=D6PAP4_9ROSI 1.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein at1g27050-like 0.0
C-terminus
biog2_v2.0_unigene9658 biogeco2 v2.0 578
• AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
• FL-Next: sp=Receptor-like protein kinase THESEUS 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: protein 0.0
Internal
biog2_v2.0_unigene9705 biogeco2 v2.0 242
• AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
N-terminus
biog2_v2.0_unigene9818 biogeco2 v2.0 788
• AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 0.0
• Blast2go: rna-binding protein 0.0
Coding
biog2_v2.0_unigene9844 biogeco2 v2.0 259
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 5.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ctc-interacting domain 11 protein 0.0
Putative N-terminus
biog2_v2.0_unigene9905 biogeco2 v2.0 379
• AutoFact: pfam01762, Galactosyl_T, Galactosyltransferase 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: glycosyltransferase-like protein 0.0
C-terminus
biog2_v2.0_unigene9925 biogeco2 v2.0 479
• AutoFact: PREDICTED: similar to TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor isoform 6 [Canis familiaris] 1.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 4.582e-37
Internal
biog2_v2.0_unigene9927 biogeco2 v2.0 235
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp40-like 0.0
Internal
biog2_v2.0_unigene9974 biogeco2 v2.0 535
• AutoFact: Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RNK5_RICCO 9.99995e-41
• Blast2go: 28 kda chloroplastic-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain