Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene5808 biogeco2 v2.0 1041
AutoFact: strictosidine synthase-like 3 [Arabidopsis thaliana] gb|AAL31926.1|AF419594_1 At1g08470/T27G7_9 [Arabidopsis thaliana] gb|AAL36403.1| unknown protein [Arabidopsis thaliana] gb|AAM51389.1| unknown protein [Arabidopsis thaliana] gb|AEE28296.1| strictosidine 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: strictosidine synthase family protein 0.0
Internal
biog2_v2.0_unigene5821 biogeco2 v2.0 1763
AutoFact: RNA-binding protein AKIP1-like n=1 Tax=Solanum tuberosum RepID=Q2V9B8_SOLTU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
biog2_v2.0_unigene5829 biogeco2 v2.0 1140
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene5874 biogeco2 v2.0 581
AutoFact: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Oryza sativa Japonica Group] gb|ABA92375.1| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] gb|EEE51928.1| hypothetical protein OsJ_33542 [Oryza sativa Japoni 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
N-terminus
biog2_v2.0_unigene5969 biogeco2 v2.0 1086
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
N-terminus
biog2_v2.0_unigene5983 biogeco2 v2.0 1228
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9SSZ3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lupus la 0.0
C-terminus
biog2_v2.0_unigene6027 biogeco2 v2.0 783
AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 5.99994e-41
FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: glycine-rich rna-binding protein 0.0
Putative Complete
biog2_v2.0_unigene6050 biogeco2 v2.0 596
AutoFact: Homeobox transcription factor n=1 Tax=Jatropha curcas RepID=D6PAP4_9ROSI 1.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein at1g27050-like 0.0
N-terminus
biog2_v2.0_unigene6112 biogeco2 v2.0 1577
AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly -binding protein 0.0
Complete
biog2_v2.0_unigene6193 biogeco2 v2.0 1913
AutoFact: Heterogeneous nuclear ribonucleoprotein A3-like protein 2 n=3 Tax=Andropogoneae RepID=B6TV58_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 0.0
Complete
biog2_v2.0_unigene6202 biogeco2 v2.0 606
AutoFact: polypyrimidine track-binding protein homologue [Cicer arietinum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polypyrimidine tract-binding protein homolog 3-like 0.0
Putative C-terminus
biog2_v2.0_unigene6243 biogeco2 v2.0 307
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
Blast2go: heterogeneous nuclear 0.0
unknown
biog2_v2.0_unigene6992 biogeco2 v2.0 1501
AutoFact: CTC-interacting domain 9 protein [Arabidopsis thaliana] dbj|BAB01337.1| unnamed protein product [Arabidopsis thaliana] gb|AEE75527.1| CTC-interacting domain 9 protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ctc-interacting domain 8 protein 0.0
Complete
biog2_v2.0_unigene7125 biogeco2 v2.0 801
AutoFact: Phosphofructokinase, putative n=1 Tax=Ricinus communis RepID=B9RRX6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 6-phosphofructokinase 3-like 0.0
Internal
biog2_v2.0_unigene7247 biogeco2 v2.0 785
AutoFact: poly(A)-binding protein [Daucus carota] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog2_v2.0_unigene7264 biogeco2 v2.0 582
AutoFact: putative splicing factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 39-like 0.0
N-terminus
biog2_v2.0_unigene7314 biogeco2 v2.0 678
AutoFact: cell division protease ftsH-11 [Arabidopsis thaliana] sp|Q9FGM0.1|FTSHB_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial; Short=AtFTSH11; Flags: Precursor dbj|BAB08420.1| cell division protein FtsH protease-like 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
Coding
biog2_v2.0_unigene7369 biogeco2 v2.0 565
AutoFact: FERONIA receptor-like kinase [Cardamine flexuosa] 0.0
FL-Next: sp=Receptor-like protein kinase FERONIA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: feronia receptor-like kinase 0.0
C-terminus
biog2_v2.0_unigene7415 biogeco2 v2.0 591
AutoFact: tobacco nucleolin [Nicotiana tabacum] 5.60519e-45
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: rna-binding protein 0.0
Putative C-terminus
biog2_v2.0_unigene7486 biogeco2 v2.0 462
AutoFact: RNA-directed RNA Polymerase (Fragment) n=1 Tax=Vigna unguiculata RepID=Q75ZN6_VIGUN 6.0e-26
Blast2go: rna-dependent rna polymerase 2.78958e-38
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain