Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco2 v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene4752 biogeco2 v2.0 928
AutoFact: Stachyose synthase, putative n=1 Tax=Ricinus communis RepID=B9SXA4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: alkaline alpha galactosidase i 0.0
C-terminus
biog2_v2.0_unigene4773 biogeco2 v2.0 1612
AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u2 snrnp auxiliary small 0.0
Complete
biog2_v2.0_unigene4777 biogeco2 v2.0 1103
AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 0.0
Complete
biog2_v2.0_unigene4779 biogeco2 v2.0 642
AutoFact: RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T403_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 5 10 0.0
Putative C-terminus
biog2_v2.0_unigene4789 biogeco2 v2.0 963
AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 3 subunit b-like 0.0
C-terminus
biog2_v2.0_unigene4804 biogeco2 v2.0 1274
AutoFact: U1snRNP-specific protein, U1A n=1 Tax=Solanum tuberosum RepID=Q41498_SOLTU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: small nuclear ribonucleoprotein u1a 0.0
Complete
biog2_v2.0_unigene4885 biogeco2 v2.0 765
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7C9_RICCO 6.0e-20
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 3.90149e-22
C-terminus
biog2_v2.0_unigene4923 biogeco2 v2.0 893
AutoFact: DNA binding protein ACBF-like [Solanum tuberosum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear acid binding 0.0
C-terminus
biog2_v2.0_unigene5023 biogeco2 v2.0 1079
AutoFact: developmentally regulated G-protein 1 [Arabidopsis thaliana] ref|NP_001077555.1| developmentally regulated G-protein 1 [Arabidopsis thaliana] gb|AAF97313.1|AC007843_16 GTP binding protein [Arabidopsis thaliana] gb|AAX12862.1| At1g17470 [Arabidopsis thalia 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: developmentally regulated g-protein 1 0.0
Putative Complete
biog2_v2.0_unigene5145 biogeco2 v2.0 1514
AutoFact: RNA-binding protein [Medicago truncatula] 5.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene5222 biogeco2 v2.0 1402
AutoFact: WS00731.B21_I11 WS-PS-N-A-8 Picea glauca cDNA clone WS00731_I11 3, mRNA sequence. 0.0
FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum. 0.0
Blast2go: desiccation-related protein pcc13-62-like 0.0
Complete
biog2_v2.0_unigene5265 biogeco2 v2.0 1563
AutoFact: RNA-binding protein [Medicago truncatula] 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene5303 biogeco2 v2.0 1053
AutoFact: glycine-rich RNA-binding protein 3 [Arabidopsis thaliana] dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana] gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana] gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana] dbj|BAH30642.1| hypo 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycine-rich rna-binding 0.0
Complete
biog2_v2.0_unigene5318 biogeco2 v2.0 1368
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein mitochondrial-like 0.0
Complete
biog2_v2.0_unigene5368 biogeco2 v2.0 1282
AutoFact: RNA-binding protein [Medicago truncatula] 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene5456 biogeco2 v2.0 1126
AutoFact: RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana] dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96804.1| Unknown prot 7.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif family expressed 0.0
Complete
biog2_v2.0_unigene5480 biogeco2 v2.0 1007
AutoFact: heterogeneous nuclear ribonucleoprotein A1/A3 [Arabidopsis thaliana] dbj|BAB08520.1| unnamed protein product [Arabidopsis thaliana] gb|AAM97131.1| ribonucleoprotein-like [Arabidopsis thaliana] gb|AED94553.1| heterogeneous nuclear ribonucleoprotein A1/A3 [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif-containing protein 0.0
C-terminus
biog2_v2.0_unigene5610 biogeco2 v2.0 706
AutoFact: Os03g0374575 protein n=4 Tax=Oryza sativa RepID=C7J0R1_ORYSJ 4.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing arginine serine-rich 4 0.0
Putative Complete
biog2_v2.0_unigene5777 biogeco2 v2.0 758
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein s24e family protein 0.0
Misassembled
biog2_v2.0_unigene5802 biogeco2 v2.0 429
AutoFact: Putative RNA-binding protein n=1 Tax=Solanum lycopersicum RepID=B1N661_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 40-like 0.0
Putative C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain