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Assembly Name: biogeco2 v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene19400 biogeco2 v2.0 621
AutoFact: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-splicing factor sf2 0.0
N-terminus
biog2_v2.0_unigene19432 biogeco2 v2.0 435
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAL67015.1| putative DNA binding protein ACBF [Arabidopsis thaliana] gb|AAM45052.1| putative DNA binding protein ACBF [Arabidopsis thaliana] gb|AED92689.1| RNA recognition motif-containing 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene19449 biogeco2 v2.0 309
AutoFact: Citrate synthase n=1 Tax=Picea sitchensis RepID=B8LLL1_PICSI 0.0
Blast2go: citrate synthase 0.0
unknown
biog2_v2.0_unigene19451 biogeco2 v2.0 444
AutoFact: RNA-binding protein [Arabidopsis thaliana] gb|AAK52994.1|AF375410_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK56266.1|AF367277_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK06847.1| VirF-interacting protein FIP1 [Arabidopsis thaliana] gb|AAL0708 0.0
Blast2go: lupus la 0.0
Putative coding
biog2_v2.0_unigene19526 biogeco2 v2.0 633
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp40 0.0
C-terminus
biog2_v2.0_unigene19572 biogeco2 v2.0 445
AutoFact: Herpes_gp2 multi-domain protein 6.0e-06
Coding
biog2_v2.0_unigene19595 biogeco2 v2.0 494
AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly -binding protein 0.0
C-terminus
biog2_v2.0_unigene19660 biogeco2 v2.0 483
AutoFact: Nucleotide-sugar transporter family protein [Arabidopsis thaliana] sp|Q9SUV2.1|PT432_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At4g32390 emb|CAA22566.1| putative protein [Arabidopsis thaliana] emb|CAB79956.1| putative protein [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleotide-sugar transporter family protein 0.0
Putative N-terminus
biog2_v2.0_unigene19710 biogeco2 v2.0 497
AutoFact: RNA recognition water-stress protein1 [Zea mays] gb|AAN04093.1| water-stress protein [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
C-terminus
biog2_v2.0_unigene19772 biogeco2 v2.0 512
AutoFact: WS00731.B21_I11 WS-PS-N-A-8 Picea glauca cDNA clone WS00731_I11 3, mRNA sequence. 0.0
FL-Next: sp=Desiccation-related protein PCC13-62; Craterostigma plantagineum. 0.0
Blast2go: desiccation-related protein pcc13-62-like isoform 2 0.0
Putative N-terminus
biog2_v2.0_unigene19835 biogeco2 v2.0 657
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAB03120.1| unnamed protein product [Arabidopsis thaliana] gb|AAL85976.1| unknown protein [Arabidopsis thaliana] gb|AAM67536.1| unknown protein [Arabidopsis thaliana] dbj|BAD94504.1| hypo 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain