Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene16083 biogeco2 v2.0 393
• AutoFact: RNA-dependent RNA polymerase n=2 Tax=Gossypium hirsutum RepID=B2B9K0_GOSHI 0.0
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-dependent rna polymerase 0.0
Internal
biog2_v2.0_unigene16136 biogeco2 v2.0 468
• AutoFact: DNA binding protein ACBF-like [Solanum tuberosum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nuclear acid binding 0.0
Internal
biog2_v2.0_unigene16157 biogeco2 v2.0 518
• AutoFact: polypyrimidine tract-binding-like [Solanum tuberosum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polypyrimidine tract-binding protein homolog 2-like 0.0
Internal
biog2_v2.0_unigene16199 biogeco2 v2.0 461
• AutoFact: ATP-dependent peptidase, putative n=1 Tax=Ricinus communis RepID=B9RIL2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
Internal
biog2_v2.0_unigene16283 biogeco2 v2.0 378
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thalia 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative C-terminus
biog2_v2.0_unigene16328 biogeco2 v2.0 257
• AutoFact: RNA-binding protein MEI2, putative; 36123-32976 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein mei2-like 2-like 0.0
Internal
biog2_v2.0_unigene16364 biogeco2 v2.0 174
• AutoFact: RNA recognition motif containing protein, putative [Solanum demissum] 2.0e-11
• Blast2go: protein vip1-like isoform 1 4.45564e-26
unknown
biog2_v2.0_unigene16393 biogeco2 v2.0 347
• AutoFact: RNA-directed RNA polymerase (Fragment) n=1 Tax=Petunia x hybrida RepID=Q9ZRX3_PETHY 3.0e-39
• FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna-directed rna polymerase 2.8026e-45
Internal
biog2_v2.0_unigene16443 biogeco2 v2.0 262
• AutoFact: DUF1777 multi-domain protein 5.0e-14
Coding
biog2_v2.0_unigene16518 biogeco2 v2.0 328
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 5.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
C-terminus
biog2_v2.0_unigene16538 biogeco2 v2.0 68
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7C9_RICCO 6.0e-20
• Blast2go: protein 3.90149e-22
unknown
biog2_v2.0_unigene16568 biogeco2 v2.0 457
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SEZ1_RICCO 2.0e-09
• Blast2go: flowering time control protein fpa 0.0
unknown
biog2_v2.0_unigene16634 biogeco2 v2.0 386
• AutoFact: MEI2-like protein 4 [Arabidopsis thaliana] sp|Q9LYN7.1|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb|CAB87285.1| Mei2-like protein [Arabidopsis thaliana] dbj|BAE99028.1| Mei2-like protein [Arabidopsis thal 0.0
• Blast2go: protein mei2-like 4-like 0.0
unknown
biog2_v2.0_unigene16651 biogeco2 v2.0 548
• AutoFact: SC35-like splicing factor 28 [Arabidopsis thaliana] gb|ABE66166.1| 28 kDa SC35-like splicing factor [Arabidopsis thaliana] gb|AED92615.1| SC35-like splicing factor 28 [Arabidopsis thaliana] 8.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing arginine serine-rich 13a 0.0
N-terminus
biog2_v2.0_unigene16734 biogeco2 v2.0 386
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp40-like 0.0
Putative N-terminus
biog2_v2.0_unigene16755 biogeco2 v2.0 323
• AutoFact: MEI2-like protein 5 [Arabidopsis thaliana] ref|NP_849727.1| MEI2-like protein 5 [Arabidopsis thaliana] sp|Q8VWF5.1|AML5_ARATH RecName: Full=Protein MEI2-like 5; Short=AML5; AltName: Full=MEI2-like protein 5 gb|AAL32691.1| RNA-binding protein MEI2, putativ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein mei2-like 2-like 0.0
N-terminus
biog2_v2.0_unigene16867 biogeco2 v2.0 155
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAC42069.1| unknown protein [Arabidopsis thaliana] gb|AEE75401.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• Blast2go: rna recognition motif-containing protein 0.0
unknown
biog2_v2.0_unigene16945 biogeco2 v2.0 107
• AutoFact: poly(A)-binding protein II-like [Brassica rapa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog2_v2.0_unigene16998 biogeco2 v2.0 192
• AutoFact: Flowering time control protein-like protein (Fragment) n=1 Tax=Picea sitchensis RepID=E0ZL31_PICSI 7.0e-11
• Blast2go: flowering time control protein 2.21199e-12
unknown
biog2_v2.0_unigene17132 biogeco2 v2.0 698
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAD94469.1| putative RNA-binding protein [Arabidopsis thaliana] dbj|BAF01884.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AEC10093.1| RNA recognition motif-containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein with multiple splicing 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain