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Assembly Name: biogeco2 v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene15342 biogeco2 v2.0 298
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO 0.0
FL-Next: sp=Receptor-like protein kinase THESEUS 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog2_v2.0_unigene15352 biogeco2 v2.0 313
AutoFact: Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana] dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gb|AAO50630.1| putative dimethyladeno 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dimethyladenosine transferase 0.0
N-terminus
biog2_v2.0_unigene15396 biogeco2 v2.0 394
AutoFact: putative arginine/serine-rich protein [Arabidopsis thaliana] 9.99967e-42
Blast2go: protein arginine serine-rich 45 0.0
unknown
biog2_v2.0_unigene15406 biogeco2 v2.0 273
AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB10647.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana] gb|AAO23575.1| At5g60980/MSL3_100 0.0
Blast2go: rna binding 0.0
unknown
biog2_v2.0_unigene15409 biogeco2 v2.0 442
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] gb|AED97923.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: aaa-type atpase family protein 0.0
Internal
biog2_v2.0_unigene15436 biogeco2 v2.0 297
AutoFact: polypyrimidine tract-binding protein-like [Solanum tuberosum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: polypyrimidine tract-binding protein homolog 2-like 0.0
Internal
biog2_v2.0_unigene15469 biogeco2 v2.0 171
AutoFact: RNA recognition motif (ISS) [Ostreococcus tauri] emb|CAL51584.1| RNA recognition motif (ISS) [Ostreococcus tauri] 3.0e-25
Blast2go: probable rna-binding protein 19-like 0.0
unknown
biog2_v2.0_unigene15564 biogeco2 v2.0 317
AutoFact: putative galactinol--sucrose galactosyltransferase 6 [Arabidopsis thaliana] gb|AAL90901.1| AT5g20250/F5O24_140 [Arabidopsis thaliana] gb|AAN18198.1| At5g20250/F5O24_140 [Arabidopsis thaliana] dbj|BAE99252.1| seed imbitition protein-like [Arabidopsis thali 0.0
FL-Next: sp=Probable galactinol--sucrose galactosyltransferase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: galactinol--sucrose galactosyltransferase 6 0.0
Internal
biog2_v2.0_unigene15647 biogeco2 v2.0 357
AutoFact: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO 0.0
FL-Next: sp=Phytochrome A-associated F-box protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: phytochrome a-associated f-box protein 0.0
C-terminus
biog2_v2.0_unigene15721 biogeco2 v2.0 328
AutoFact: pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition protein Sip1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: raffinose synthase-like protein 0.0
Putative N-terminus
biog2_v2.0_unigene15754 biogeco2 v2.0 245
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI 0.0
Blast2go: rna binding 0.0
unknown
biog2_v2.0_unigene15833 biogeco2 v2.0 142
AutoFact: tobacco nucleolin [Nicotiana tabacum] 5.60519e-45
Blast2go: rna-binding protein 0.0
unknown
biog2_v2.0_unigene15838 biogeco2 v2.0 406
AutoFact: putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group] 0.0
Blast2go: arginine serine-rich splicing 0.0
unknown
biog2_v2.0_unigene15847 biogeco2 v2.0 471
AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RUQ0_RICCO 3.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleic acid binding 0.0
Internal
biog2_v2.0_unigene15910 biogeco2 v2.0 395
AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
biog2_v2.0_unigene15936 biogeco2 v2.0 352
AutoFact: Os01g0367300 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JJM4_ORYSJ 7.0e-19
Blast2go: copper ion binding 3.29634e-21
unknown
biog2_v2.0_unigene15952 biogeco2 v2.0 407
AutoFact: P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] ref|NP_001031270.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] ref|NP_001031271.1| P-loop containing nucleoside triphospha 0.0
Blast2go: p-loop containing nucleoside triphosphate hydrolase-like protein 0.0
unknown
biog2_v2.0_unigene16001 biogeco2 v2.0 270
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna binding 0.0
N-terminus
biog2_v2.0_unigene16035 biogeco2 v2.0 126
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
Blast2go: rna recognition motif -containing protein 0.0
unknown
biog2_v2.0_unigene16080 biogeco2 v2.0 242
AutoFact: polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb|AAU90050.1 2.0e-25
Blast2go: polypyrimidine tract binding 5.90211e-32
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain