Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene14451 biogeco2 v2.0 121
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAB09337.1| unnamed protein product [Arabidopsis thaliana] gb|AAL59923.1| unknown protein [Arabidopsis thaliana] gb|AAM20239.1| unknown protein [Arabidopsis thaliana] gb|AAM62467.1| unkno 3.0e-30
• Blast2go: rna recognition motif-containing protein 0.0
unknown
biog2_v2.0_unigene14471 biogeco2 v2.0 420
• AutoFact: transmembrane protein 14C [Arabidopsis thaliana] gb|AAK91438.1| AT3g43520/T18D12_90 [Arabidopsis thaliana] gb|AAN18102.1| At3g43520/T18D12_90 [Arabidopsis thaliana] gb|AEE77802.1| transmembrane protein 14C [Arabidopsis thaliana] 9.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative N-terminus
biog2_v2.0_unigene14557 biogeco2 v2.0 329
• AutoFact: heterogeneous nuclear ribonucleoprotein R [Gallus gallus] ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Meleagris gallopavo] 4.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein r 0.0
C-terminus
biog2_v2.0_unigene14635 biogeco2 v2.0 488
• AutoFact: zinc finger CCCH domain-containing protein 24 [Arabidopsis thaliana] sp|Q8L7S3.1|C3H24_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 24; Short=AtC3H24 gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana] gb|AAN72304.1| At2g28450/T1B3.3 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 24-like 0.0
Internal
biog2_v2.0_unigene14717 biogeco2 v2.0 356
• AutoFact: homeodomain-leucine zipper protein 57 [Glycine max] 5.0e-34
• Blast2go: homeobox-leucine zipper protein athb-6-like 2.01282e-38
unknown
biog2_v2.0_unigene14805 biogeco2 v2.0 335
• AutoFact: Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 6 0.0
Putative C-terminus
biog2_v2.0_unigene14851 biogeco2 v2.0 387
• AutoFact: RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] gb|AEE75227.1| RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polyadenylate-binding protein 2-a 0.0
Internal
biog2_v2.0_unigene14901 biogeco2 v2.0 374
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 46; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: zinc finger ccch domain-containing protein 53-like 0.0
Internal
biog2_v2.0_unigene14922 biogeco2 v2.0 224
• AutoFact: polypyrimidine tract-binding protein-like [Solanum tuberosum] 0.0
• Blast2go: polypyrimidine tract-binding protein homolog 2-like 0.0
unknown
biog2_v2.0_unigene14961 biogeco2 v2.0 176
• AutoFact: RNA-binding protein, putative [Musa acuminata] 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
unknown
biog2_v2.0_unigene14963 biogeco2 v2.0 115
• AutoFact: RNA binding protein-like protein n=1 Tax=Solanum tuberosum RepID=Q2VCH8_SOLTU 0.0
• Blast2go: mki67 fha domain-interacting nucleolar phospho 0.0
unknown
biog2_v2.0_unigene15035 biogeco2 v2.0 603
• AutoFact: Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum] 5.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 5.60519e-45
N-terminus
biog2_v2.0_unigene15038 biogeco2 v2.0 95
• AutoFact: Acid phosphatase (Fragment) n=1 Tax=Picea abies RepID=B2KZJ5_PICAB 0.0
• Blast2go: acid phosphatase 1 0.0
unknown
biog2_v2.0_unigene15091 biogeco2 v2.0 730
• AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding region-containing 0.0
Putative N-terminus
biog2_v2.0_unigene15129 biogeco2 v2.0 334
• AutoFact: putative zinc dependent protease [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog2_v2.0_unigene15147 biogeco2 v2.0 462
• AutoFact: RNA recognition motif-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SU08_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: flowering time control protein fpa 0.0
Internal
biog2_v2.0_unigene15215 biogeco2 v2.0 224
• AutoFact: Os01g0367300 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JJM4_ORYSJ 8.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
C-terminus
biog2_v2.0_unigene15250 biogeco2 v2.0 388
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S290_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nucleic acid binding 0.0
N-terminus
biog2_v2.0_unigene15285 biogeco2 v2.0 245
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI 0.0
• Blast2go: rna binding 0.0
unknown
biog2_v2.0_unigene15314 biogeco2 v2.0 363
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain