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Assembly Name: biogeco2 v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene11996 biogeco2 v2.0 432
AutoFact: putative RNA binding ribonucleoprotein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Expressed protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna recognition motif-containing protein 0.0
N-terminus
biog2_v2.0_unigene12018 biogeco2 v2.0 376
AutoFact: bidirectional amino acid transporter 1 [Arabidopsis thaliana] gb|AAB71542.1| putative amino acid or GABA permease [Arabidopsis thaliana] gb|AAD14517.2| putative amino acid or GABA permease [Arabidopsis thaliana] gb|AEC05409.1| bidirectional amino acid tra 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized amino-acid permease -like 0.0
Internal
biog2_v2.0_unigene12075 biogeco2 v2.0 480
AutoFact: Putative copine I (Fragment) n=1 Tax=Picea abies RepID=B2KZG6_PICAB 0.0
Blast2go: e3 ubiquitin-protein ligase rglg2-like 0.0
unknown
biog2_v2.0_unigene12325 biogeco2 v2.0 364
AutoFact: heterogeneous nuclear ribonucleoprotein R [Gallus gallus] ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Meleagris gallopavo] 4.0e-19
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein r 0.0
Internal
biog2_v2.0_unigene12403 biogeco2 v2.0 127
AutoFact: DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] ref|NP_001031930.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAM91576.1| putative protein [Arabidopsis thaliana] gb|AAP13437.1| At5g23590 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dnaj heat shock n-terminal domain-containing protein 0.0
N-terminus
biog2_v2.0_unigene12422 biogeco2 v2.0 238
AutoFact: RNA-binding protein-like [Oryza sativa Japonica Group] gb|EEE69405.1| hypothetical protein OsJ_28765 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=RanBP2-type zinc finger protein At1g67325; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna binding 0.0
Internal
biog2_v2.0_unigene12535 biogeco2 v2.0 204
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 8.90714e-37
Internal
biog2_v2.0_unigene12566 biogeco2 v2.0 319
AutoFact: RHO guanyl-nucleotide exchange factor 7 [Arabidopsis thaliana] emb|CAB82974.1| putative protein [Arabidopsis thaliana] gb|AAU94394.1| At5g02010 [Arabidopsis thaliana] gb|AAV59279.1| At5g02010 [Arabidopsis thaliana] gb|AED90419.1| RHO guanyl-nucleotide exc 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene12578 biogeco2 v2.0 575
AutoFact: Unassigned protein
FL-Next: sp=Zinc finger CCCH domain-containing protein 53; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna binding 0.0
Internal
biog2_v2.0_unigene12667 biogeco2 v2.0 244
AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
Putative C-terminus
biog2_v2.0_unigene12716 biogeco2 v2.0 241
AutoFact: Gly_rich multi-domain protein 1.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: zinc finger protein 0.0
C-terminus
biog2_v2.0_unigene12825 biogeco2 v2.0 308
AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
unknown
biog2_v2.0_unigene13035 biogeco2 v2.0 350
AutoFact: DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] ref|NP_001031930.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAM91576.1| putative protein [Arabidopsis thaliana] gb|AAP13437.1| At5g23590 [Ar 0.0
Blast2go: dnaj heat shock n-terminal domain-containing protein 0.0
unknown
biog2_v2.0_unigene13056 biogeco2 v2.0 104
AutoFact: putative beta-1,3-galactosyltransferase 9 [Arabidopsis thaliana] sp|Q5XEZ1.1|B3GT9_ARATH RecName: Full=Probable beta-1,3-galactosyltransferase 9 gb|AAU94388.1| At2g25300 [Arabidopsis thaliana] gb|AAW50705.1| At2g25300 [Arabidopsis thaliana] gb|AEC07684.1| 0.0
Blast2go: transferring glycosyl groups 0.0
unknown
biog2_v2.0_unigene13075 biogeco2 v2.0 298
AutoFact: nucleic acid binding protein [Arabidopsis thaliana] ref|NP_001118640.1| nucleic acid binding protein [Arabidopsis thaliana] gb|ABF59160.1| hypothetical protein At3g15605 [Arabidopsis thaliana] gb|AEE75698.1| nucleic acid binding protein [Arabidopsis thali 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
biog2_v2.0_unigene13085 biogeco2 v2.0 344
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna recognition motif -containing protein 0.0
C-terminus
biog2_v2.0_unigene13215 biogeco2 v2.0 449
AutoFact: MEI2-like protein 5 [Arabidopsis thaliana] ref|NP_849727.1| MEI2-like protein 5 [Arabidopsis thaliana] sp|Q8VWF5.1|AML5_ARATH RecName: Full=Protein MEI2-like 5; Short=AML5; AltName: Full=MEI2-like protein 5 gb|AAL32691.1| RNA-binding protein MEI2, putativ 0.0
Blast2go: protein mei2-like 4-like 0.0
unknown
biog2_v2.0_unigene13289 biogeco2 v2.0 255
AutoFact: tobacco nucleolin [Nicotiana tabacum] 9.99995e-41
Blast2go: rna-binding protein 1.68156e-44
unknown
biog2_v2.0_unigene13297 biogeco2 v2.0 132
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna binding 0.0
Internal
biog2_v2.0_unigene13322 biogeco2 v2.0 320
AutoFact: Os01g0367300 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JJM4_ORYSJ 7.0e-19
Blast2go: copper ion binding 3.29634e-21
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain