Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Term: IPR011545  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene15868 biogeco2 v2.0 323
AutoFact: putative DEAD box-like RNA helicase [Oryza sativa Japonica Group] dbj|BAD19277.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group] 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 1; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dead box-like rna helicase 0.0
C-terminus
biog2_v2.0_unigene15921 biogeco2 v2.0 225
AutoFact: DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] gb|AAM26693.1| At5g26743 [Arabidopsis thaliana] gb|AAO42779.1| At5g26743 [Arabidopsis thaliana] gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase chloroplastic-like 0.0
C-terminus
biog2_v2.0_unigene15989 biogeco2 v2.0 388
AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 6.99949e-42
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: probable atp-dependent rna helicase ythdc2-like 0.0
Internal
biog2_v2.0_unigene16171 biogeco2 v2.0 553
AutoFact: Putative chloroplast RNA helicase VDL isoform 1 n=3 Tax=Nicotiana tabacum RepID=Q9FE48_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 58 0.0
Internal
biog2_v2.0_unigene16534 biogeco2 v2.0 270
AutoFact: DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana] sp|P93008.1|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21 gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gb|AAL38370.1| put 0.0
Blast2go: dead-box atp-dependent rna helicase 0.0
unknown
biog2_v2.0_unigene16647 biogeco2 v2.0 239
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 20 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 0.0
Internal
biog2_v2.0_unigene16687 biogeco2 v2.0 309
AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9R8Y0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable pre-mrna-splicing factor atp-dependent rna helicase-like 0.0
N-terminus
biog2_v2.0_unigene16710 biogeco2 v2.0 441
AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pre-mrna-splicing factor atp-dependent rna helicase 0.0
Internal
biog2_v2.0_unigene17087 biogeco2 v2.0 260
AutoFact: RNA helicase n=1 Tax=Vigna radiata var. radiata RepID=Q9M6R6_VIGRR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 7-like 0.0
Internal
biog2_v2.0_unigene17428 biogeco2 v2.0 451
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SX92_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead box atp-dependent rna 0.0
Putative C-terminus
biog2_v2.0_unigene17517 biogeco2 v2.0 327
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9T0X5_RICCO 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 29; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: dead-box atp-dependent rna helicase 29-like 0.0
Internal
biog2_v2.0_unigene17733 biogeco2 v2.0 741
AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
Blast2go: dead-box atp-dependent rna helicase 14 0.0
Putative coding
biog2_v2.0_unigene18741 biogeco2 v2.0 593
AutoFact: DEAD-box ATP-dependent RNA helicase 2 n=6 Tax=BEP clade RepID=RH2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nicotiana eukaryotic translation initiation factor 4a 0.0
C-terminus
biog2_v2.0_unigene18957 biogeco2 v2.0 546
AutoFact: DEAD-box ATP-dependent RNA helicase 6 n=6 Tax=BEP clade RepID=RH6_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 8-like 0.0
N-terminus
biog2_v2.0_unigene18989 biogeco2 v2.0 529
AutoFact: pfam00270, DEAD, DEAD/DEAH box helicase 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog2_v2.0_unigene19129 biogeco2 v2.0 425
AutoFact: putative DEAD box-like RNA helicase [Oryza sativa Japonica Group] dbj|BAD19277.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead box-like rna helicase 0.0
Internal
biog2_v2.0_unigene19382 biogeco2 v2.0 550
AutoFact: putative ATP-dependent RNA helicase [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 17-like 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain