Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: RNA helicase, ATP-dependent, DEAD-box, conserved site

Term: IPR000629  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene41 biogeco2 v2.0 378
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 20 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 0.0
Internal
biog2_v2.0_unigene47 biogeco2 v2.0 412
AutoFact: DEAD BOX RNA helicase RH15-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene74 biogeco2 v2.0 809
AutoFact: pfam00270, DEAD, DEAD/DEAH box helicase 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative N-terminus
biog2_v2.0_unigene77 biogeco2 v2.0 714
AutoFact: PRP38 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-splicing factor 38b 0.0
N-terminus
biog2_v2.0_unigene368 biogeco2 v2.0 886
AutoFact: Subtilisin-like protease n=2 Tax=Arabidopsis RepID=SUBL_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: subtilisin-like protease 0.0
Putative C-terminus
biog2_v2.0_unigene1250 biogeco2 v2.0 571
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 13 dbj|BAA95778.1| ATP-dependent RNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 13 0.0
C-terminus
biog2_v2.0_unigene1262 biogeco2 v2.0 324
AutoFact: MIP-T3 multi-domain protein 8.0e-16
Blast2go: f-box-like wd repeat-containing protein tbl1xr1-like 0.0
unknown
biog2_v2.0_unigene1497 biogeco2 v2.0 608
AutoFact: DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana] sp|Q9SA27.1|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36 gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 36-like 0.0
Putative C-terminus
biog2_v2.0_unigene1994 biogeco2 v2.0 1296
AutoFact: DEAD BOX RNA helicase RH15-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene2180 biogeco2 v2.0 1371
AutoFact: putative subtilisin serine protease [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: subtilisin-like protease-like 0.0
Complete
biog2_v2.0_unigene2550 biogeco2 v2.0 844
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
Blast2go: dead-box atp-dependent rna helicase 53-like 0.0
Coding
biog2_v2.0_unigene2588 biogeco2 v2.0 393
AutoFact: MIP-T3 multi-domain protein 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: f-box-like wd repeat-containing protein tbl1xr1-like 0.0
N-terminus
biog2_v2.0_unigene2618 biogeco2 v2.0 2254
AutoFact: putative subtilisin serine protease [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: subtilisin-like protease-like 0.0
Complete
biog2_v2.0_unigene2735 biogeco2 v2.0 633
AutoFact: MFAP1_C domain containing protein 0.0001
FL-Next: Isoform 2 of Trihelix transcription factor GTL1 OS=Arabidopsis thaliana GN=GTL1 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene2960 biogeco2 v2.0 534
AutoFact: PRP38 multi-domain protein 0.0
Blast2go: pre-mrna-splicing factor 38b 0.0
Putative coding
biog2_v2.0_unigene3145 biogeco2 v2.0 1035
AutoFact: protein transport protein SEC31 [Arabidopsis thaliana] gb|AAM20553.1| putative protein [Arabidopsis thaliana] gb|AAP37794.1| At3g63460 [Arabidopsis thaliana] gb|AEE80486.1| protein transport protein SEC31 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein transport protein sec31 0.0
C-terminus
biog2_v2.0_unigene3179 biogeco2 v2.0 565
AutoFact: putative cytochrome P450 protein [Oryza sativa Japonica Group] gb|AAP54351.1| Cytochrome P450 family protein, expressed [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cytochrome p450 0.0
C-terminus
biog2_v2.0_unigene3313 biogeco2 v2.0 2368
AutoFact: putative DegP2 protease [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protease do-like 9-like 0.0
Putative Complete
biog2_v2.0_unigene3758 biogeco2 v2.0 341
AutoFact: PRP38_assoc multi-domain protein 3.0e-09
Putative coding
biog2_v2.0_unigene3891 biogeco2 v2.0 336
AutoFact: serine protease-like protein [Nicotiana tabacum] 0.0
Blast2go: subtilisin-like protease-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain