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Assembly Name: biogeco2 v2.0

Name: Winged helix-turn-helix transcription repressor DNA-binding

Term: IPR011991  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene44 biogeco2 v2.0 614
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9S0U6_RICCO 6.0e-18
FL-Next: tr=Lupus la ribonucleoprotein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: atp synthase subunit a chloroplastic 5.02155e-22
Internal
biog2_v2.0_unigene170 biogeco2 v2.0 444
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone-like protein 0.0
N-terminus
biog2_v2.0_unigene211 biogeco2 v2.0 1047
AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone-like protein 6.59534e-40
Complete
biog2_v2.0_unigene730 biogeco2 v2.0 962
AutoFact: RNA-binding protein [Arabidopsis thaliana] gb|AAK52994.1|AF375410_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK56266.1|AF367277_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK06847.1| VirF-interacting protein FIP1 [Arabidopsis thaliana] gb|AAL0708 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lupus la 0.0
C-terminus
biog2_v2.0_unigene1205 biogeco2 v2.0 836
AutoFact: cullin 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-protein cullin 4 0.0
Complete
biog2_v2.0_unigene1301 biogeco2 v2.0 1229
AutoFact: histone H1-like protein [Zea mays] gb|ACN27409.1| unknown [Zea mays] 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: single myb histone 0.0
Complete
biog2_v2.0_unigene2093 biogeco2 v2.0 1880
AutoFact: 26S proteasome subunit RPN5b n=1 Tax=Elaeis guineensis RepID=B3TM04_ELAGV 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 26s proteasome non-atpase regulatory subunit 12-like 0.0
Complete
biog2_v2.0_unigene2168 biogeco2 v2.0 1265
AutoFact: translation initiation factor 3 subunit K [Arabidopsis thaliana] sp|Q9SZA3.1|EIF3K_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit K; Short=eIF3k; AltName: Full=eIF-3 p25 gb|AAG53637.1|AF291713_1 initiation factor 3k [Arabidopsis th 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene2203 biogeco2 v2.0 1059
AutoFact: replication protein A 30kDa [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication protein a 32 kda subunit 0.0
C-terminus
biog2_v2.0_unigene2207 biogeco2 v2.0 742
AutoFact: Os01g0570500 protein n=3 Tax=Oryza sativa RepID=Q656Y0_ORYSJ 0.0
Blast2go: protein 0.0
Coding
biog2_v2.0_unigene2529 biogeco2 v2.0 1029
AutoFact: 26S proteasome regulatory subunit N6 [Arabidopsis thaliana] gb|AAF88122.1|AC021043_15 Similar to 26S proteasome subunits [Arabidopsis thaliana] gb|AAK44018.1|AF370203_1 putative 19S proteosome subunit 9 [Arabidopsis thaliana] gb|AAL07160.1| putative 19S p 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene2556 biogeco2 v2.0 1006
AutoFact: O-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9S0A7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: caffeic acid 3-o-methyltransferase 0.0
N-terminus
biog2_v2.0_unigene2566 biogeco2 v2.0 587
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9SSZ3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lupus la 0.0
N-terminus
biog2_v2.0_unigene2567 biogeco2 v2.0 622
AutoFact: casein kinase I-like [Oryza sativa Japonica Group] 0.0
Blast2go: protein 0.0
Putative coding
biog2_v2.0_unigene2825 biogeco2 v2.0 1209
AutoFact: putative Eukaryotic translation initiation factor 3 subunit 8 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene2950 biogeco2 v2.0 537
AutoFact: Histone H1.1, putative n=1 Tax=Ricinus communis RepID=B9SH10_RICCO 0.0
Blast2go: telomere repeat binding factor 1 0.0
unknown
biog2_v2.0_unigene2972 biogeco2 v2.0 735
AutoFact: putative Eukaryotic translation initiation factor 3 subunit 8 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Eukaryotic translation initiation factor 3 subunit C; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene3492 biogeco2 v2.0 682
AutoFact: Histone acetyltransferase n=5 Tax=rosids RepID=B9H794_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone acetyltransferase 0.0
C-terminus
biog2_v2.0_unigene3537 biogeco2 v2.0 643
AutoFact: Glutaredoxin-related-like protein n=3 Tax=Oryza sativa RepID=Q67UI1_ORYSJ 0.0
Blast2go: vacuolar membrane-associated protein iml1 0.0
Coding
biog2_v2.0_unigene3564 biogeco2 v2.0 556
AutoFact: Heat Shock Factor 3 [Arabidopsis thaliana] 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heat stress transcription factor a-4a-like 2.43562e-16
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain