Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco2 v2.0

Name: Winged helix-turn-helix transcription repressor DNA-binding

Term: IPR011991  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene5749 biogeco2 v2.0 400
AutoFact: uncharacterized protein [Arabidopsis thaliana] ref|NP_974613.1| uncharacterized protein [Arabidopsis thaliana] emb|CAB36745.1| putative protein [Arabidopsis thaliana] emb|CAB79412.1| putative protein [Arabidopsis thaliana] gb|AAM62860.1| unknown [Arabidop 0.0
Blast2go: uncharacterized protein 0.0
Putative coding
biog2_v2.0_unigene5983 biogeco2 v2.0 1228
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9SSZ3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lupus la 0.0
C-terminus
biog2_v2.0_unigene6060 biogeco2 v2.0 611
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 4.0e-27
FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
Blast2go: histone h1 3.06217e-31
C-terminus
biog2_v2.0_unigene6148 biogeco2 v2.0 1008
AutoFact: Histone H1-like protein (Fragment) n=15 Tax=Picea sitchensis RepID=E0ZG68_PICSI 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h1-like protein 2.10941e-32
Complete
biog2_v2.0_unigene6353 biogeco2 v2.0 1320
AutoFact: Caffeate O-methyltransferase n=4 Tax=Picea RepID=Q5NDD5_PICAB 0.0
FL-Next: tr=Caffeate O-methyltransferase; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: caffeic acid 3-o-methyltransferase 0.0
Complete
biog2_v2.0_unigene7152 biogeco2 v2.0 496
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9S0U6_RICCO 0.0
unknown
biog2_v2.0_unigene7234 biogeco2 v2.0 433
AutoFact: putative Eukaryotic translation initiation factor 3 subunit 8 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene7270 biogeco2 v2.0 531
AutoFact: COP9 signalosome complex subunit 4 [Arabidopsis thaliana] sp|Q8L5U0.2|CSN4_ARATH RecName: Full=COP9 signalosome complex subunit 4; Short=AtS4; Short=Signalosome subunit 4; AltName: Full=Constitutive photomorphogenesis protein 8; AltName: Full=Protein FUSC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cop9 signalosome complex subunit 4 0.0
N-terminus
biog2_v2.0_unigene7286 biogeco2 v2.0 534
AutoFact: putative transcription initiation factor IIF beta subunit [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription initiation factor iif subunit 0.0
Internal
biog2_v2.0_unigene7362 biogeco2 v2.0 547
AutoFact: COP9 signalosome complex subunit 3 [Arabidopsis thaliana] sp|Q8W575.2|CSN3_ARATH RecName: Full=COP9 signalosome complex subunit 3; Short=Signalosome subunit 3; AltName: Full=Protein FUSCA 11 gb|AAL58102.1|AF395059_1 CSN complex subunit 3 [Arabidopsis thal 0.0
FL-Next: sp=COP9 signalosome complex subunit 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cop9 signalosome complex subunit 3 0.0
Putative N-terminus
biog2_v2.0_unigene7483 biogeco2 v2.0 409
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9S0U6_RICCO 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
biog2_v2.0_unigene7804 biogeco2 v2.0 527
AutoFact: putative COP9 signalosome complex subunit 2 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cop9 signalosome complex subunit 2-like 0.0
Internal
biog2_v2.0_unigene7828 biogeco2 v2.0 574
AutoFact: Casein kinase n=1 Tax=Beta vulgaris RepID=A2I5G0_BETVU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene7876 biogeco2 v2.0 492
AutoFact: heat shock factor protein hsf8-related [Glycine max] 0.0
FL-Next: sp=Heat stress transcription factor A-4b; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: heat shock transcription factor 1 0.0
C-terminus
biog2_v2.0_unigene7932 biogeco2 v2.0 518
AutoFact: Heat shock transcription factor (HSF) [Glycine max] 1.4013e-45
Blast2go: heat stress transcription factor b-4-like 0.0
Putative coding
biog2_v2.0_unigene8145 biogeco2 v2.0 458
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9S0U6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
biog2_v2.0_unigene8168 biogeco2 v2.0 426
AutoFact: pfam00294, PfkB, pfkB family carbohydrate kinase 8.0e-09
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: carbohydrate pyrimidine family protein 0.0
Internal
biog2_v2.0_unigene8416 biogeco2 v2.0 627
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: la protein 1 0.0
Internal
biog2_v2.0_unigene8715 biogeco2 v2.0 469
AutoFact: Glutaredoxin-related-like protein n=3 Tax=Oryza sativa RepID=Q67UI1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: vacuolar membrane-associated protein iml1 0.0
C-terminus
biog2_v2.0_unigene8803 biogeco2 v2.0 270
AutoFact: phototropic-responsive NPH3-like protein [Arabidopsis thaliana] ref|NP_974103.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] ref|NP_001185347.1| phototropic-responsive NPH3-like protein [Arabidopsis thaliana] sp|Q9C9V6.1|Y1790_ARATH Re 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phototropic-responsive nph3-like protein 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain