Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco2 v2.0

Name: Winged helix-turn-helix transcription repressor DNA-binding

Term: IPR011991  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene3584 biogeco2 v2.0 385
AutoFact: Heat shock factor protein HSF8, putative n=1 Tax=Ricinus communis RepID=B9SNT1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heat shock factor 0.0
Internal
biog2_v2.0_unigene3593 biogeco2 v2.0 352
AutoFact: putative transcription initiation factor [Oryza sativa Japonica Group] gb|ABB46979.1| mutant TFIIF-alpha, putative, expressed [Oryza sativa Japonica Group] 2.0e-32
FL-Next: Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 0.0
Blast2go: transcription initiation factor iif subunit alpha 7.42688e-44
Putative C-terminus
biog2_v2.0_unigene3817 biogeco2 v2.0 604
AutoFact: Heat stress transcription factor B-2b n=3 Tax=Oryza sativa RepID=HFB2B_ORYSJ 0.0
FL-Next: sp=Heat stress transcription factor B-2b; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: heat shock factor protein 7 0.0
Internal
biog2_v2.0_unigene3971 biogeco2 v2.0 212
AutoFact: MYB transcription factor MYB107 [Glycine max] 3.0e-34
Blast2go: telomere repeat binding factor 1 0.0
Coding
biog2_v2.0_unigene4106 biogeco2 v2.0 536
AutoFact: casein kinase I-like [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene4184 biogeco2 v2.0 923
AutoFact: cullin 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-protein cullin 4 0.0
Internal
biog2_v2.0_unigene4222 biogeco2 v2.0 454
AutoFact: Caffeate O-methyltransferase n=4 Tax=Picea RepID=Q5NDD5_PICAB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: caffeic acid 3-o-methyltransferase 0.0
C-terminus
biog2_v2.0_unigene4413 biogeco2 v2.0 262
AutoFact: COP9 signalosome complex subunit 4 [Arabidopsis thaliana] sp|Q8L5U0.2|CSN4_ARATH RecName: Full=COP9 signalosome complex subunit 4; Short=AtS4; Short=Signalosome subunit 4; AltName: Full=Constitutive photomorphogenesis protein 8; AltName: Full=Protein FUSC 0.0
Blast2go: cop9 signalosome complex subunit 4 0.0
unknown
biog2_v2.0_unigene4446 biogeco2 v2.0 469
AutoFact: Histone acetyltransferase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJM4_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone acetyltransferase 0.0
C-terminus
biog2_v2.0_unigene4478 biogeco2 v2.0 370
AutoFact: Strong similarity to the sucrose-phosphate synthase from Craterostigma plantagineum gb|Y11795 [Arabidopsis thaliana] 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: sucrose-phosphate synthase 5.32664e-11
Internal
biog2_v2.0_unigene4652 biogeco2 v2.0 1547
AutoFact: cullin 1-like protein C [Petunia integrifolia subsp. inflata] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
biog2_v2.0_unigene4689 biogeco2 v2.0 795
AutoFact: COP9 signalosome complex subunit 4 [Arabidopsis thaliana] sp|Q8L5U0.2|CSN4_ARATH RecName: Full=COP9 signalosome complex subunit 4; Short=AtS4; Short=Signalosome subunit 4; AltName: Full=Constitutive photomorphogenesis protein 8; AltName: Full=Protein FUSC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cop9 signalosome complex subunit 4 0.0
C-terminus
biog2_v2.0_unigene4693 biogeco2 v2.0 1085
AutoFact: uncharacterized protein [Arabidopsis thaliana] ref|NP_974613.1| uncharacterized protein [Arabidopsis thaliana] emb|CAB36745.1| putative protein [Arabidopsis thaliana] emb|CAB79412.1| putative protein [Arabidopsis thaliana] gb|AAM62860.1| unknown [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
Complete
biog2_v2.0_unigene4734 biogeco2 v2.0 805
AutoFact: COP9 signalosome complex subunit 3 [Arabidopsis thaliana] sp|Q8W575.2|CSN3_ARATH RecName: Full=COP9 signalosome complex subunit 3; Short=Signalosome subunit 3; AltName: Full=Protein FUSCA 11 gb|AAL58102.1|AF395059_1 CSN complex subunit 3 [Arabidopsis thal 0.0
FL-Next: sp=COP9 signalosome complex subunit 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cop9 signalosome complex subunit 3 0.0
C-terminus
biog2_v2.0_unigene4736 biogeco2 v2.0 982
AutoFact: cullin 1-like protein C [Petunia integrifolia subsp. inflata] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
biog2_v2.0_unigene4873 biogeco2 v2.0 1195
AutoFact: casein kinase I-like [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
biog2_v2.0_unigene5474 biogeco2 v2.0 703
AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h1-like protein 3.10277e-31
N-terminus
biog2_v2.0_unigene5560 biogeco2 v2.0 682
AutoFact: uncharacterized protein [Arabidopsis thaliana] ref|NP_974613.1| uncharacterized protein [Arabidopsis thaliana] emb|CAB36745.1| putative protein [Arabidopsis thaliana] emb|CAB79412.1| putative protein [Arabidopsis thaliana] gb|AAM62860.1| unknown [Arabidop 7.0e-22
FL-Next: tr=Putative uncharacterized protein Sb01g027670; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: uncharacterized protein loc100193661 8.4402e-32
N-terminus
biog2_v2.0_unigene5618 biogeco2 v2.0 450
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 4.0e-27
Blast2go: histone h1 3.06217e-31
Putative coding
biog2_v2.0_unigene5707 biogeco2 v2.0 1178
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 1.0e-35
FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
Blast2go: histone h1 1.06569e-41
Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain