Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: biogeco2 v2.0

Name: Reverse transcriptase, RNA-dependent DNA polymerase

Term: IPR013103  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene2618 biogeco2 v2.0 2254
AutoFact: putative subtilisin serine protease [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: subtilisin-like protease-like 0.0
Complete
biog2_v2.0_unigene2621 biogeco2 v2.0 1565
AutoFact: pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein 8.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: sodium calcium exchanger family protein 0.0
Complete
biog2_v2.0_unigene2737 biogeco2 v2.0 394
AutoFact: Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9S058_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cinnamoyl- reductase 0.0
N-terminus
biog2_v2.0_unigene3245 biogeco2 v2.0 601
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
Putative Complete
biog2_v2.0_unigene3589 biogeco2 v2.0 804
AutoFact: tryptophan aminotransferase related 2 [Arabidopsis thaliana] ref|NP_974608.1| tryptophan aminotransferase related 2 [Arabidopsis thaliana] gb|AAK92714.1| putative alliin lyase [Arabidopsis thaliana] gb|AAM14394.1| putative alliin lyase [Arabidopsis thalia 0.0
FL-Next: sp=Tryptophan aminotransferase-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: alliin lyase 0.0
Internal
biog2_v2.0_unigene3891 biogeco2 v2.0 336
AutoFact: serine protease-like protein [Nicotiana tabacum] 0.0
Blast2go: subtilisin-like protease-like 0.0
unknown
biog2_v2.0_unigene3993 biogeco2 v2.0 468
AutoFact: PREDICTED: similar to Bifunctional dihydrofolate reductase-thymidylate synthase n=1 Tax=Vitis vinifera RepID=UPI0001982DBD 0.0
FL-Next: sp=Bifunctional dihydrofolate reductase-thymidylate synthase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dihydrofolate reductase-thymidylate synthase 0.0
C-terminus
biog2_v2.0_unigene4035 biogeco2 v2.0 387
AutoFact: Signal recognition particle subunit srp72, putative n=1 Tax=Ricinus communis RepID=B9RMK3_RICCO 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: signal recognition particle subunit srp72 0.0
C-terminus
biog2_v2.0_unigene4084 biogeco2 v2.0 534
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
Blast2go: retrotransposon unclassified 0.0
unknown
biog2_v2.0_unigene4086 biogeco2 v2.0 906
AutoFact: KH_1 domain containing protein 5.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly -binding 0.0
Complete
biog2_v2.0_unigene4122 biogeco2 v2.0 717
AutoFact: Alanyl-tRNA synthetase n=4 Tax=Arabidopsis RepID=SYA_ARATH 0.0
FL-Next: Isoform Cytoplasmic of Alanyl-tRNA synthetase OS=Arabidopsis thaliana GN=ALATS 0.0
Blast2go: alanyl-trna synthetase 0.0
Internal
biog2_v2.0_unigene4262 biogeco2 v2.0 622
AutoFact: Prolyl 4-hydroxylase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9RSW4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: prolyl 4-hydroxylase alpha subunit-like protein 0.0
N-terminus
biog2_v2.0_unigene4415 biogeco2 v2.0 966
AutoFact: putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa Japonica Group] dbj|BAD54694.1| putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Inositol-tetrakisphosphate 1-kinase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: inositol-tetrakisphosphate 1-kinase 4-like 0.0
Internal
biog2_v2.0_unigene4474 biogeco2 v2.0 929
AutoFact: RVT_2 domain containing protein 1.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 0.0
C-terminus
biog2_v2.0_unigene4480 biogeco2 v2.0 512
AutoFact: LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9S4B8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lob domain-containing protein 0.0
Putative Complete
biog2_v2.0_unigene4656 biogeco2 v2.0 1055
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear transcription factor y subunit a-9-like 0.0
C-terminus
biog2_v2.0_unigene4690 biogeco2 v2.0 660
AutoFact: oxidoreductase [Arabidopsis thaliana] ref|NP_001078177.1| oxidoreductase [Arabidopsis thaliana] gb|AAK62416.1|AF386971_1 Unknown protein [Arabidopsis thaliana] dbj|BAB02034.1| unnamed protein product [Arabidopsis thaliana] gb|AAP37844.1| At3g18210 [Arabid 0.0
FL-Next: sp=Uncharacterized PKHD-type hydroxylase At1g22950; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: uncharacterized pkhd-type hydroxylase at1g22950-like 0.0
N-terminus
biog2_v2.0_unigene4992 biogeco2 v2.0 1045
AutoFact: PLAC8 family protein [Arabidopsis thaliana] sp|Q9M9A5.1|PCR6_ARATH RecName: Full=Protein PLANT CADMIUM RESISTANCE 6; Short=AtPCR6 gb|AAF69715.1|AC016041_20 F27J15.18 [Arabidopsis thaliana] gb|AAR24706.1| At1g49030 [Arabidopsis thaliana] gb|AAS47652.1| At1 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog2_v2.0_unigene5620 biogeco2 v2.0 617
AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hat family dimerisation domain containing protein 1.69322e-26
Internal
biog2_v2.0_unigene5887 biogeco2 v2.0 392
AutoFact: Dimer_Tnp_hAT domain containing protein 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hypothetical protein VITISV_000807 [Vitis vinifera] 2.40568e-19
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain