Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Zinc finger, CCHC-type

Term: IPR001878  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene13707 biogeco2 v2.0 547
AutoFact: Class I peptide chain release factor [Arabidopsis thaliana] gb|AAG51290.1|AC027035_13 unknown protein [Arabidopsis thaliana] dbj|BAC42157.1| putative peptide chain release factor [Arabidopsis thaliana] gb|AAP04114.1| putative peptide chain release factor 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: class i peptide chain release factor 0.0
N-terminus
biog2_v2.0_unigene13773 biogeco2 v2.0 248
AutoFact: RecName: Full=Cytochrome P450 750A1; AltName: Full=Cytochrome P450 CYPC gb|AAX07433.1| cytochrome P450 CYPC [Pinus taeda] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cytochrome p450 monooxygenase cyp736b 0.0
Internal
biog2_v2.0_unigene13796 biogeco2 v2.0 329
AutoFact: MYB transcription factor [Hevea brasiliensis] 0.0
Blast2go: dna binding 0.0
unknown
biog2_v2.0_unigene13851 biogeco2 v2.0 251
AutoFact: DnaJ protein-like [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chaperone protein dnaj mitochondrial-like 0.0
Internal
biog2_v2.0_unigene13944 biogeco2 v2.0 446
AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Putative C-terminus
biog2_v2.0_unigene13977 biogeco2 v2.0 388
AutoFact: NXRV092_H05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV092_H05 5' similar to Arabidopsis thaliana sequence At2g13930 putative retroelement pol polyprotein see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: hypothetical protein VITISV_004415 [Vitis vinifera] 0.0
Internal
biog2_v2.0_unigene14318 biogeco2 v2.0 178
AutoFact: alpha-mannosidase [Arabidopsis thaliana] emb|CAA66821.1| alpha-mannosidase [Arabidopsis thaliana] emb|CAA72432.1| alpha-mannosidase precursor [Arabidopsis thaliana] dbj|BAB01735.1| alpha-mannosidase [Arabidopsis thaliana] gb|AAK62592.1| AT3g26720/MLJ15_12 0.0
FL-Next: tr=Putative uncharacterized protein Sb01g026405; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene14390 biogeco2 v2.0 120
AutoFact: GK15001 gene product from transcript GK15001-RA 0.0
Blast2go: hypothetical protein VITISV_037436 [Vitis vinifera] 0.0
unknown
biog2_v2.0_unigene14397 biogeco2 v2.0 377
AutoFact: RNA helicase n=1 Tax=Vigna radiata var. radiata RepID=Q9M6R6_VIGRR 0.0
Blast2go: dead-box atp-dependent rna helicase 7-like 0.0
unknown
biog2_v2.0_unigene14502 biogeco2 v2.0 275
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
biog2_v2.0_unigene14518 biogeco2 v2.0 90
AutoFact: PREDICTED: actin depolymerizing factor isoform 1 [Vitis vinifera] sp|Q8SAG3.1|ADF_VITVI RecName: Full=Actin-depolymerizing factor; Short=ADF gb|AAL79826.1|AF440310_1 actin depolymerizing factor [Vitis vinifera] 0.0
Blast2go: actin depolymerizing factor 0.0
unknown
biog2_v2.0_unigene14536 biogeco2 v2.0 482
AutoFact: SET domain-containing protein (ISS) [Ostreococcus tauri] emb|CAL55747.1| SET domain-containing protein (ISS) [Ostreococcus tauri] 0.0
FL-Next: sp=Probable histone-lysine N-methyltransferase ATXR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: probable histone-lysine n-methyltransferase atxr3-like 0.0
Internal
biog2_v2.0_unigene14691 biogeco2 v2.0 327
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
Blast2go: retrotransposon unclassified 0.0
unknown
biog2_v2.0_unigene14803 biogeco2 v2.0 303
AutoFact: A/G-specific adenine glycosylase [Arabidopsis thaliana] gb|AEE83174.1| A/G-specific adenine glycosylase [Arabidopsis thaliana] 0.0
Blast2go: a g-specific adenine dna glycosylase 0.0
Putative coding
biog2_v2.0_unigene14876 biogeco2 v2.0 302
AutoFact: protein kinase-like protein [Arabidopsis thaliana] gb|AAF05853.1|AC011698_4 putative casein kinase [Arabidopsis thaliana] gb|AEE74014.1| protein kinase-like protein [Arabidopsis thaliana] 0.0
Blast2go: protein kinase-like protein 0.0
unknown
biog2_v2.0_unigene14924 biogeco2 v2.0 233
AutoFact: putative E3 ubiquitin-protein ligase ARI8 [Arabidopsis thaliana] sp|Q8W468.1|ARI8_ARATH RecName: Full=Probable E3 ubiquitin-protein ligase ARI8; AltName: Full=ARIADNE-like protein ARI8; AltName: Full=Protein ariadne homolog 8 gb|AAL32886.1| Unknown protei 0.0
FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene15086 biogeco2 v2.0 366
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
biog2_v2.0_unigene15161 biogeco2 v2.0 246
AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QP36_ORYSJ 1.0e-28
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: reverse transcriptase 1.43514e-35
Internal
biog2_v2.0_unigene15196 biogeco2 v2.0 321
AutoFact: Cinnamoyl-CoA reductase n=2 Tax=Malvoideae RepID=D9ZKR8_9ROSI 0.0
FL-Next: tr=Cinnamoyl-CoA reductase; Pinus massoniana. 0.0
Blast2go: cinnamoyl reductase 0.0
Putative C-terminus
biog2_v2.0_unigene15207 biogeco2 v2.0 389
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RZN5_RICCO 2.00386e-43
Blast2go: protein 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain