Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: Zinc finger, CCHC-type

Term: IPR001878  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene6252 biogeco2 v2.0 1325
AutoFact: Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: xyloglucan endotransglucosylase hydrolase protein 9 0.0
Complete
biog2_v2.0_unigene6414 biogeco2 v2.0 447
AutoFact: histone H4 [Hyacinthus orientalis] 3.0e-38
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone h4 0.0
Complete
biog2_v2.0_unigene7256 biogeco2 v2.0 549
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
biog2_v2.0_unigene7268 biogeco2 v2.0 660
AutoFact: DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 52C; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog2_v2.0_unigene7361 biogeco2 v2.0 580
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
unknown
biog2_v2.0_unigene7366 biogeco2 v2.0 483
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
Blast2go: dead-box atp-dependent rna helicase 53-like 0.0
unknown
biog2_v2.0_unigene7444 biogeco2 v2.0 525
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RZN5_RICCO 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene7492 biogeco2 v2.0 727
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
biog2_v2.0_unigene7510 biogeco2 v2.0 412
AutoFact: CCHC-type zinc knuckle protein [Arabidopsis thaliana] emb|CAB82947.1| putative protein [Arabidopsis thaliana] gb|ABP88117.1| At3g62330 [Arabidopsis thaliana] gb|AEE80339.1| CCHC-type zinc knuckle protein [Arabidopsis thaliana] 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene7518 biogeco2 v2.0 882
AutoFact: O-fucosyltransferase-like protein [Arabidopsis thaliana] sp|Q8W486.1|Y1491_ARATH RecName: Full=DUF246 domain-containing protein At1g04910 gb|AAL32840.1| Similar to auxin-independent growth promoter (axi 1) [Arabidopsis thaliana] gb|AAP68319.1| At1g04910 [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
C-terminus
biog2_v2.0_unigene7732 biogeco2 v2.0 603
AutoFact: putative actin depolymerizing factor [Sorghum bicolor] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene7781 biogeco2 v2.0 343
AutoFact: alpha-mannosidase [Arabidopsis thaliana] emb|CAA66821.1| alpha-mannosidase [Arabidopsis thaliana] emb|CAA72432.1| alpha-mannosidase precursor [Arabidopsis thaliana] dbj|BAB01735.1| alpha-mannosidase [Arabidopsis thaliana] gb|AAK62592.1| AT3g26720/MLJ15_12 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Internal
biog2_v2.0_unigene7893 biogeco2 v2.0 493
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001078409.1| RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAA19684.1| putative protein [Arabidopsis thaliana] emb|CAB78969.1| putative protein [Arabidopsis thaliana] gb| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene8189 biogeco2 v2.0 507
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R9V5_RICCO 0.0
Blast2go: splicing factor 1 0.0
unknown
biog2_v2.0_unigene8232 biogeco2 v2.0 804
AutoFact: Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Picea sitchensis RepID=A9NNT0_PICSI 0.0
FL-Next: sp=Eukaryotic translation initiation factor 3 subunit G; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: initiation factor 3g 0.0
C-terminus
biog2_v2.0_unigene8238 biogeco2 v2.0 534
AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 5 -3 exoribonuclease 3-like 0.0
C-terminus
biog2_v2.0_unigene8337 biogeco2 v2.0 360
AutoFact: DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ 0.0
Blast2go: protein 0.0
unknown
biog2_v2.0_unigene8477 biogeco2 v2.0 572
AutoFact: Cinnamoyl CoA reductase n=7 Tax=Populus RepID=B2Z6Q2_POPTR 0.0
FL-Next: tr=Cinnamoyl-CoA reductase; Pinus massoniana. 0.0
Blast2go: cinnamoyl reductase 0.0
C-terminus
biog2_v2.0_unigene8531 biogeco2 v2.0 462
AutoFact: DEAD box protein P68 [Pisum sativum] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene8581 biogeco2 v2.0 472
AutoFact: Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] gb|AAL50066.1| At2g30880/F7F1.9 [Arabidopsis thaliana] gb|AAN28904.1| At2g30880/F7F1.9 [Arabidopsis thaliana] gb|AEC08451.1| Pleckstrin homology (PH) domain-containing protein [Arab 0.0
Blast2go: ph domain containing protein 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain