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Assembly Name: Hypothalamus m-f1 v1.0

UniGene Name: hpt_m_f1_v1.0_unigene275

Length: 432 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>hpt_m_f1_v1.0_unigene275
AGACAGCCGCTGGTGCGAGGCTCCTCCTCGCGTCGTCGTGTGAGTGAGAACAAGACGCAGCCTTGCCGGAGGGAGGCGGAGGCGGTTGGTTGTCAGTTGAGTTTCGCTGGTAGCTAGTGCTGACAGGTCAGCTCTAACCACTCGTTCATCTGCGGAGGGCGTAAGGAAGGAAGGAATCTCCCAAACCGGAGTGACATGGAAGACGCGGTCGGTGTTAGCGCGTACGGAGCTTCGCTCGCCGGACGAGGTTTCGACTTCTACAAGTTTATCCGACAACCGCAAACTGTTGTGCGGCTACTCAGCTGGTTATTTGCCCTGGTGGTGTTTGCCTGCATCACAACAGAGGGATACATCAACAGTCCAACCAGTGCTGAGGCAAAGTGTATCTTCAACCAGAGCGACTCGGCGTGTCACTATGCTGTCGCCATCGGG

Ace file of the UniGene hpt_m_f1_v1.0_unigene275 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio).	-	-	0.0	69%
Sma3	Synaptogyrin 1	-	-	8.023e-10	-
AutoFact	syngr2b, wu:fj62c03, zgc:162081; synaptogyrin 2b	-	-	2.0e-23	69%

Source	Gene names
Sma3	SYNGR2 (2 of 2); syngr1;

Source	InterPros	Term	Type	e value	Identity
Sma3	Marvel domain	IPR008253	-	4.819e-29	-
Sma3	Synaptogyrin	IPR016579	-	1.961e-12	-
Sma3	MARVEL-like domain	IPR021128	-	1.839e-29	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: actinopterygii.fasta

Fln subject: E9QGQ6

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 79 - 161

Fln protein: MEDAVGVSAYGASLAGRGFDFYKFIRQPQTVVRLLSWLFALVVFACITTEGYINSPTSAEAKCIFNQSDSACHYAVAIG

Protein Length: 80

Fln nts: AGACAGCCGCTGGTGCGAGGCTCCTCCTCGCGTCGTCGTGTGAGTGAGAACAAGACGCAGCCTTGCCGGAGGGAGGCGGAGGCGGTTGGTTGTCAGTTGAGTTTCGCTGGTAGCTAGTGCTGACAGGTCAGCTCTAACCACTCGTTCATCTGCGGAGGGCGTAAGGAAGGAAGGAATCTCCCAAACCGGAGTGAC_-_ATGGAAGACGCGGTCGGTGTTAGCGCGTACGGAGCTTCGCTCGCCGGACGAGGTTTCGACTTCTACAAGTTTATCCGACAACCGCAAACTGTTGTGCGGCTACTCAGCTGGTTATTTGCCCTGGTGGTGTTTGCCTGCATCACAACAGAGGGATACATCAACAGTCCAACCAGTGCTGAGGCAAAGTGTATCTTCAACCAGAGCGACTCGGCGTGTCACTATGCTGTCGCCATCGGG

Fln Alignment:

Contig275___AYGASLAGRGFDFYKFIRQPQTVVRLLSWLFALVVFACITTEGYINSPTSAEAKCIFNQSDSACHYAVAIG
E9QGQ6___________________AYGASLAGAGFDLVKFIKQPQTVVRFLSWVFAIVVFSSITAEGYVNSTDEAEVRCVFNRNDGACHYGVGIG

SNPs (tot: 0)

Position	A %	C %	G %	T %	Probability
274		60		40	1.0
373	16	83			0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
257	270	TTCC TTCC TTCC TT	14

Curation

No curations to show

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