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Assembly Name: Gonads v1

UniGene Name: gonads_v1_unigene23951

Length: 277 nt

UniGene Fasta

>gonads_v1_unigene23951
ATAATAAGAGGAGATGCAGATAAAATTCTTGCTTTTACTCTTTTTGCTATCACTCCCCTGCCCAGATGTTCCACTGGTTACCATGGTAACCCAAGGATGCCAGGTGGTCACTGTGAGGAGTGTAAGTGTTACGTGTGGGGCTCGTTGCCCGGACCATGTGACCCTGTTACAGGCCAGTGCCCTTGCAGGGTTGGGGCCTCGGGAAAGTCGTGTGACCAGTGCATGGAGAGGCATGTGTGTGGACCAGCTGGAAGTCATCTGTAAGACTAACACACAG

Ace file of the UniGene gonads_v1_unigene23951

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
Solea senegalensis v2.0 (global assembly)	solea_v2.0_unigene75966	2/2

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio).	-	-	0.0	53%
Sma3	Laminin alpha 2 chain	-	-	7.44e-06	-
AutoFact	PREDICTED: zinc finger BED domain-containing protein 1-like n=2 Tax=Acyrthosiphon pisum RepID=UPI0002061BE3	-	-	6.0e-17	43%

Source	Gene names
Sma3	GSTENG00030428001;

Source	GOs	Term	Type	e value	Identity
Sma3	laminin-1 complex	GO:0005606	Cellular Component	5.365e-08	-
Sma3	regulation of cell adhesion	GO:0030155	Biological Process	8.958e-08	-
Sma3	regulation of cell migration	GO:0030334	Biological Process	7.468e-08	-
Sma3	regulation of embryonic development	GO:0045995	Biological Process	5.365e-08	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Laminin B type IV	IPR000034	-	1.347e-07	-
Sma3	Laminin G domain	IPR001791	-	9.424e-06	-
Sma3	EGF-like, laminin	IPR002049	-	6.037e-06	-
Sma3	Laminin I	IPR009254	-	5.365e-08	-
Sma3	Laminin II	IPR010307	-	5.365e-08	-
Sma3		IPR012679	-	3.933e-07	-
Sma3	Laminin B, subgroup	IPR018031	-	6.91e-08	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: actinopterygii.fasta

Fln subject: E7F3L8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1123 aas, your sequence is shorter than subject: 88 - 2660

Fln protein: IIRGDADKILAFTLFAITPLPRCSTGYHGNPRMPGGHCEECKCYVWGSLPGPCDPVTGQCPCRVGASGKSCDQCMERHVCGPAGSHL*

Protein Length: 89

Fln nts: ATAATAAGAGGAGATGCAGATAAAATTCTTGCTTTTACTCTTTTTGCTATCACTCCCCTGCCCAGATGTTCCACTGGTTACCATGGTAACCCAAGGATGCCAGGTGGTCACTGTGAGGAGTGTAAGTGTTACGTGTGGGGCTCGTTGCCCGGACCATGTGACCCTGTTACAGGCCAGTGCCCTTGCAGGGTTGGGGCCTCGGGAAAGTCGTGTGACCAGTGCATGGAGAGGCATGTGTGTGGACCAGCTGGAAGTCATCTGTAAGACTAACACACAG

Fln Alignment:

Contig23951___RCSTGYHGNPRMPGGHCEECKCYVWGSLPGPCDPVTGQCPCRVGASGKSCDQCMERHV
E7F3L8_________________RCAVGYFGNPSEPGGRCQVCACSESGSVHSVCDAHTGRCECKPGVRGHLCDQCEERHV

Curation

No curations to show

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