SoleaDB

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Assembly info
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Assembly Name: Gonads v1

UniGene Name: gonads_v1_unigene19824

Length: 476 nt

UniGene Fasta

>gonads_v1_unigene19824
CAAAAAGCATCATAATCTAATTTTAATACATCAGAATGCTCAAGTTTTACTGGCCTGTCATGTCTGGAAGTAAACCATTGATATAAATAGATCTCCTGTACTGTTGTTGTTTTTGAGGTGATTCCTCCTGCTGTGTATTTAAGAGTCACTGAGAACGTACATCACATTATCGCATTCATTGAAGGGATAATCAAAAATGGACACGCCTACGCTACAAAAGAAGGCGATGTGTATTTTGACATTCAGTCCATTGGTGATCGTTATGGCAAGTTTGTCAAAGCTGCGGACTTGCAGGAAGAATCTGGCACATCATACAAACGAGACTCGAGGGATTTTGCTCTGTGGAAACATTCCAAACCTCAAGAACCATTCTGGGACTCTCCGTGGGGCAGAGGAAGGCCTGGCTGGCACATTGAATGCTCAACCATAGCTAGCTGTTTGTTTGGGAGTCAGCTGGACATACACTCTGGAGGTAT

Ace file of the UniGene gonads_v1_unigene19824

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
Solea senegalensis v2.0 (global assembly)	solea_v2.0_unigene68834	4/4

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Uncharacterized protein; Danio rerio (Zebrafish) (Brachydanio rerio).	-	-	0.0	64%
Sma3	Cysteinyl-tRNA synthetase	-	-	8.883e-25	-
AutoFact	Myosin heavy chain n=1 Tax=Dicentrarchus labrax RepID=Q2PMW9_DICLA	-	-	9.0e-16	91%

Source	ECs	Term	Type	e value	Identity
Sma3	cysteine---tRNA ligase	EC:6.1.1.16	-	5.513e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		5.513e-23	%

Source	Gene names
Sma3	CARS; CARS2; cars; cars2;

Source	GOs	Term	Type	e value	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	3.831e-18	-
Sma3	cytosol	GO:0005829	Cellular Component	2.161e-07	-
Sma3	tRNA binding	GO:0000049	Molecular Function	5.638e-06	-
Sma3	cysteine-tRNA ligase activity	GO:0004817	Molecular Function	0.0	-
Sma3	ATP binding	GO:0005524	Molecular Function	1.726e-13	-
Sma3	cysteinyl-tRNA aminoacylation	GO:0006423	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class 1a, anticodon-binding	IPR009080	-	4.76441e-44	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	5.21605e-41	-
Sma3	Cysteinyl-tRNA synthetase, class Ia, DALR	IPR015273	-	7.869e-18	-
Sma3	Cysteine-tRNA ligase	IPR015803	-	0.0	-
Sma3	Cysteinyl-tRNA synthetase/mycothiol ligase	IPR024909	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: actinopterygii.fasta

Fln subject: E7FC09

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 289 aas, your sequence is shorter than subject: 158 - 566

Fln protein: QKAS*SNFNTSECSSFTGLSCLEVNH*YK*ISCTVVVFEVIPPAVYLRVTENVHHIIAFIEGIIKNGHAYATKEGDVYFDIQSIGDRYGKFVKAADLQEESGTSYKRDSRDFALWKHSKPQEPFWDSPWGRGRPGWHIECSTIASCLFGSQLDIHSGG

Protein Length: 159

Fln nts: CAAAAAGCATCATAATCTAATTTTAATACATCAGAATGCTCAAGTTTTACTGGCCTGTCATGTCTGGAAGTAAACCATTGATATAAATAGATCTCCTGTACTGTTGTTGTTTTTGAGGTGATTCCTCCTGCTGTGTATTTAAGAGTCACTGAGAACGTACATCACATTATCGCATTCATTGAAGGGATAATCAAAAATGGACACGCCTACGCTACAAAAGAAGGCGATGTGTATTTTGACATTCAGTCCATTGGTGATCGTTATGGCAAGTTTGTCAAAGCTGCGGACTTGCAGGAAGAATCTGGCACATCATACAAACGAGACTCGAGGGATTTTGCTCTGTGGAAACATTCCAAACCTCAAGAACCATTCTGGGACTCTCCGTGGGGCAGAGGAAGGCCTGGCTGGCACATTGAATGCTCAACCATAGCTAGCTGTTTGTTTGGGAGTCAGCTGGACATACACTCTGGAGGTAT

Fln Alignment:

Contig19824___VVVFEVIPPAVYLRVTENVHHIIAFIEGIIKNGHAYATKEGDVYFDIQSIGDRYGKFVKAADLQEESGTSYKRDSRDFALWKHSKPQEPFWDSPWGRGRPGWHIECSTIASCLFGSQLDIHSGG
E7FC09_________________MLALRVLPPVVYMRVTENIPQIIAFIERIIGNGHAYVTSQGNVYFNTKSISHRYGKLVNLGGNAGEQGVQDKENSRDFALWKASKPFEPYWESPWGQGRPGWHIECSTIASSVFGHQLDIHSGG

SNPs (tot: 0)

Position	A %	C %	G %	T %	Probability
212		75		25	0.996473
249		80		20	0.995493
298	50		50		1.0
299	25		50		0.995533

Curation

No curations to show

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