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Assembly Name: Gonads v1

UniGene Name: gonads_v1_unigene64618

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>gonads_v1_unigene64618
CCCCGCACTGACGCTGCTCTTCCTCCCATTGTTTGACACGTACAGTCGCACAGCCGTGGCCTCATATAGCGCTGTAGAGATAAAGTGGAATAAAGAAGTGGTATCGGCCAAAAAAAACGATGACATCCAAACAGAAAATCAAGATGGTGAAGGATCCAAAGAAGCCGAGGGGCAAAATGTCCTCGTACGCCTACTTTGTGCAGACATGTCGCGAAGAGCACAAGAAGAAACATCCGGAAGCCTCTGTCAACTTCTCAGAGTTCTCCAAGAGATGCTCTGAGCGGTGGAAGACTATGTCACAAAAGGAGAAATGCAAGTTTGAAGACATGGCCAAACTGGATAAGGTGCGTTATGAGAGGGAAATGAAGACCTATATTCCCCCCAAGGGCCAGAAGAAGAAGCGCTTCAAGGACCCCAACGCCCCCAAGAGACCACCGTC

Ace file of the UniGene gonads_v1_unigene64618 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=High mobility group protein; Pagrus major (Red sea bream) (Chrysophrys major).	-	-	0.0	93%
Sma3	High mobility group protein B1	-	-	4.337e-29	-

Source	Gene names
Sma3	HMG-1; HMG1; HMGB1; HMGB2; HMGB3; HMGT; hmgb1; hmgb2; hmgb3; hmgb3a; hmgb3b;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000135	-	0.0	-
Sma3		IPR000910	-	0.0	-
Sma3	High mobility group box domain	IPR009071	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	2.889e-36	-
Sma3	HMG box A DNA-binding domain, conserved site	IPR017967	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: actinopterygii.fasta

Fln subject: Q6Y235

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 106 - 200

Fln protein: MTSKQKIKMVKDPKKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKRCSERWKTMSQKEKCKFEDMAKLDKVRYEREMKTYIPPKGQKKKRFKDPNAPKRPP

Protein Length: 107

Fln nts: CCCCGCACTGACGCTGCTCTTCCTCCCATTGTTTGACACGTACAGTCGCACAGCCGTGGCCTCATATAGCGCTGTAGAGATAAAGTGGAATAAAGAAGTGGTATCGGCCAAAAAAAACG_-_ATGACATCCAAACAGAAAATCAAGATGGTGAAGGATCCAAAGAAGCCGAGGGGCAAAATGTCCTCGTACGCCTACTTTGTGCAGACATGTCGCGAAGAGCACAAGAAGAAACATCCGGAAGCCTCTGTCAACTTCTCAGAGTTCTCCAAGAGATGCTCTGAGCGGTGGAAGACTATGTCACAAAAGGAGAAATGCAAGTTTGAAGACATGGCCAAACTGGATAAGGTGCGTTATGAGAGGGAAATGAAGACCTATATTCCCCCCAAGGGCCAGAAGAAGAAGCGCTTCAAGGACCCCAACGCCCCCAAGAGACCACCGTC

Fln Alignment:

ovary_wt_euler_7976___MVKDPKKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKRCSERWKTMSQKEKCKFEDMAKLDKVRYEREMKTYIPPKGQKKKRFKDPNAPKRPP
Q6Y235_________________MGKDPKKPRGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKRCSERWKTMSPKEKGKFEDMAKLDKVRYEREMKNYIPPKGHKKKRFKDPNAPKRPP

Curation

No curations to show

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