SoleaDB

Assembly Name: Gonads v1

UniGene Name: gonads_v1_unigene12

Length: 2500 nt

UniGene Fasta

>gonads_v1_unigene12
TAGAGCATCAGCAGAGCCTCCTGTGGTGCTCATCACACTTCATCACATCTCATTTAAACGCTTTTGATTGTCTCTCTGTAATTTTGCTGAGTTGGTTTCAGCTGAAGTTGGTGCACGAGCTGAGTTAACAGACAGTTGGAGACACATTGTTTCAAGATGAGCACATTTACTGATCTGGCTGCAGAAGATAGTGTCTATCAGCCTGAGGACATGGAACTGACATGTACTACACCTCCTGTCAGCCCTCCACCCAAGCAGAGTGAAGTGAATGGTGGTTCAGAGCAGCAGACCATGAGAGTTTACCTCAGAGTCAGGCCTTTCTCTAAAGACGAACGGTTGAACGATGAAGACCAGGATTGTGTGGTGATTGAAAACAGCCAGATGGTGACACTAAATGCGCCGAAGGGTTCTGCCACCCTGAAGAACAGCGACAAGAGCATCCACAAATTCTCCTTCTCACAGATTTTTGGACCGGAGACATCACAGGCAGAGCTATATGAGGACACAGTCCAAAGCCAAATGTCTGATTTCTTGGATGGGAAGAATGCTCTGATATTCAGTTATGGTGTAACCAATGCTGGAAAAACCTTCACAATCCAAGGAACCCAGAAAGATCCGGGAATACTCCCCCGGGTGCTGGACGCCACCTTTCACCATATCGGAGGTGACCAGTATGAGGGGATGGACCTGAAGCCCTACCTGAGGAATGACGTACAATATCTGGATCCTGATCAAGTCAAGCAGGAGAGAAGTGCCAAAGCAGCCATATTTGCTTCAGTCAAAGAGGAGTATGATTATCTCAGAGGCAGCGATGGATCCGGGTCCCTACCTTGTTCTTCCACCTCTCTGTCATACAATCAAACAGTGTTGACAAGTGATCCAACAGAGGCCGACATCAGCCAGTTTGCTTTGTGGGTGGCGTTCTTTGAAATCTACAACGAGTGTGTGTATGATCTGCTTCAGCCTTCCCTGTGCACCAAGTCCAAGAAACGCTCAGCTCTCCGTGTGTGTGACGACGGTGCCGGAAATGCTTACGTCAAAGACGTTAGATGGATCAACATCCAAAGCCTGGGCGAAGCCTACAAACTCCTGCAGTTTGGGAACAAAAACAGAAGTGCCGCAGCTACTAAGATGAATCAGTCCTCCAGTAGAAGCCACAGCATATTTTCAATGAAGTTACTCAAGATTGACAGGGGTGCAGTTAAAGAATGTCAGAGTTTTCTCTGTGTGACCTGGCCGGCTCAGAAAGGTGCAACAAAACCAAGACATTTGGAGAGAGGCTGAAGGAGGCGGGAAACATCAACAACTCGCTGCTCATTCTTGGGAAGTGCATCACTGCACTGCGTAACAATCAGACCGAACGAATAAAAAGTAGCTACATCCCCTTCCGAGAGAGCAAGCTCACCAAACTCTTCCAGGCTTTTTTCTGTGGCAAAGGACGAGCTTCAATGATCGTCAACATTAATCAGTGTGCTTCCACTTACGACGAGACTCTCCATGTTATGAAATTCTCTGCCGTTGCCAAACAGGTGGTGCAGATGATCCCAGACAAACCTCTGGTATCTCTGGCTCCCTGTCTGGTCGGTCGTGATGGCAAACCTCTGGTGAGGAATGGAATGATCGATGACCAGGCCCTGGAAAGTTACCTGTCTGAAGACGAGCTGCTTGACGAAGAGGACGAGGCCGACATGTCTCTGCTGCCACAGAATGAGCTTGTGAATATGATCGACAGCCTCCGAACAAAACTCTTGGCCGAGAGAAGAAGAAACCTGGTGCAGGAAATGGAGATTCGTAAGGAAATGGGAGATGCAATGATCCAGCAGATCATGGAGAGTGAAGAACTCCACACTCGACAGATCGAGGAGTTGAAGGAGCGCTACCAAGAAAAGCTGGAGGACACATTTGAGATGTACAAGGATGCTATCAAAGAGCACGCCTACCAGAGCGCCATGAACAACCTGGAAGATGACTATGTTCCTCTGGATGAGTTCATTGCTGAACAGGAGAAAGTAGAGGCACTAAGACGTAAGGTGTCCGAGTTGGAGATGAGAGGAGCATCTGCAGTTCCATCAGTGGACGAGTCTTGCCAGACTGAATCGCCTGAAGTACCAGAAGCAGAAGGGAACGATCGATACAAACGGCTTTACAAAGAAAAATGCGCCATCGAGATGATGTGTGAGGATAAACAACAGCTTATTTTGTCCCTAGAGAGAAGGCTGATGGAGCTTAGTGAAACACTGAAGAAGGTCAGAGATGGCTTCCTGGAGAAATCTGCTGACCTGGAGGCTCTGCAGAGGAAGTCTGATGGCGAGATTGCTGAGAAGGACCTTGAGATTGCCTCACTAAAGGCCGAAGTGGAAAAGCTCAAATCCCCTTTGCAGCCCAAGGTGAAGCGAGGTCTGCTCGCCAACATCAAGGAGGCTGTTACTTCTCCACGGAAGGGAGGGTCCGGCAGAATCCTCAGGAAAACAGTTAAGACTGTACAACACTGACATTTTAA

Ace file of the UniGene gonads_v1_unigene12

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
Solea senegalensis v2.0 (global assembly)	solea_v2.0_unigene53907	165/166

Source	Descriptions	Term	Type	e value	Identity
FL-Next	tr=Kinesin-like protein Surhe; Dicentrarchus labrax (European seabass) (Morone labrax).	-	-	0.0	74%
Sma3	Kinesin-like protein Surhe	-	-	2.028e-09	-

Source	Gene names
Sma3	KIF20A; LOC776461; kif20a;

Source	GOs	Term	Type	e value	Identity
Sma3	microtubule	GO:0005874	Cellular Component	1.4013e-45	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	0.0	-
Sma3	ATP binding	GO:0005524	Molecular Function	2.203e-22	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-
Sma3	Kinesin, motor region, conserved site	IPR019821	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: actinopterygii.fasta

Fln subject: E6ZI94

Fln msg: Overlapping hits, possible frame ERROR between 1227 and 1206, your sequence is shorter than subject: 779 - 809

Fln protein: MSTFTDLAAEDSVYQPEDMELTCTTPPVSPPPKQSEVNGGSEQQTMRVYLRVRPFSKDERLNDEDQDCVVIENSQMVTLNAPKGSATLKNSDKSIHKFSFSQIFGPETSQAELYEDTVQSQMSDFLDGKNALIFSYGVTNAGKTFTIQGTQKDPGILPRVLDATFHHIGGDQYEGMDLKPYLRNDVQYLDPDQVKQERSAKAAIFASVKEEYDYLRGSDGSGSLPCSSTSLSYNQTVLTSDPTEADISQFALWVAFFEIYNECVYDLLQPSLCTKSKKRSALRVCDDGAGNAYVKDVRWINIQSLGEAYKLLQFGNKNRSAAATKMNQSSSRSHSIFSMKLLKIDRGAVxxxxxxxxxDLAGSERCNKTKTFGERLKEAGNINNSLLILGKCITALRNNQTERIKSSYIPFRESKLTKLFQAFFCGKGRASMIVNINQCASTYDETLHVMKFSAVAKQVVQMIPDKPLVSLAPCLVGRDGKPLVRNGMIDDQALESYLSEDELLDEEDEADMSLLPQNELVNMIDSLRTKLLAERRRNLVQEMEIRKEMGDAMIQQIMESEELHTRQIEELKERYQEKLEDTFEMYKDAIKEHAYQSAMNNLEDDYVPLDEFIAEQEKVEALRRKVSELEMRGASAVPSVDESCQTESPEVPEAEGNDRYKRLYKEKCAIEMMCEDKQQLILSLERRLMELSETLKKVRDGFLEKSADLEALQRKSDGEIAEKDLEIASLKAEVEKLKSPLQPKVKRGLLANIKEAVTSPRKGGSGRILRKTVKTVQH*

Protein Length: 780

Fln nts: TAGAGCATCAGCAGAGCCTCCTGTGGTGCTCATCACACTTCATCACATCTCATTTAAACGCTTTTGATTGTCTCTCTGTAATTTTGCTGAGTTGGTTTCAGCTGAAGTTGGTGCACGAGCTGAGTTAACAGACAGTTGGAGACACATTGTTTCAAG_-_ATGAGCACATTTACTGATCTGGCTGCAGAAGATAGTGTCTATCAGCCTGAGGACATGGAACTGACATGTACTACACCTCCTGTCAGCCCTCCACCCAAGCAGAGTGAAGTGAATGGTGGTTCAGAGCAGCAGACCATGAGAGTTTACCTCAGAGTCAGGCCTTTCTCTAAAGACGAACGGTTGAACGATGAAGACCAGGATTGTGTGGTGATTGAAAACAGCCAGATGGTGACACTAAATGCGCCGAAGGGTTCTGCCACCCTGAAGAACAGCGACAAGAGCATCCACAAATTCTCCTTCTCACAGATTTTTGGACCGGAGACATCACAGGCAGAGCTATATGAGGACACAGTCCAAAGCCAAATGTCTGATTTCTTGGATGGGAAGAATGCTCTGATATTCAGTTATGGTGTAACCAATGCTGGAAAAACCTTCACAATCCAAGGAACCCAGAAAGATCCGGGAATACTCCCCCGGGTGCTGGACGCCACCTTTCACCATATCGGAGGTGACCAGTATGAGGGGATGGACCTGAAGCCCTACCTGAGGAATGACGTACAATATCTGGATCCTGATCAAGTCAAGCAGGAGAGAAGTGCCAAAGCAGCCATATTTGCTTCAGTCAAAGAGGAGTATGATTATCTCAGAGGCAGCGATGGATCCGGGTCCCTACCTTGTTCTTCCACCTCTCTGTCATACAATCAAACAGTGTTGACAAGTGATCCAACAGAGGCCGACATCAGCCAGTTTGCTTTGTGGGTGGCGTTCTTTGAAATCTACAACGAGTGTGTGTATGATCTGCTTCAGCCTTCCCTGTGCACCAAGTCCAAGAAACGCTCAGCTCTCCGTGTGTGTGACGACGGTGCCGGAAATGCTTACGTCAAAGACGTTAGATGGATCAACATCCAAAGCCTGGGCGAAGCCTACAAACTCCTGCAGTTTGGGAACAAAAACAGAAGTGCCGCAGCTACTAAGATGAATCAGTCCTCCAGTAGAAGCCACAGCATATTTTCAATGAAGTTACTCAAGATTGACAGGGGTGCAGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxGACCTGGCCGGCTCAGAAAGGTGCAACAAAACCAAGACATTTGGAGAGAGGCTGAAGGAGGCGGGAAACATCAACAACTCGCTGCTCATTCTTGGGAAGTGCATCACTGCACTGCGTAACAATCAGACCGAACGAATAAAAAGTAGCTACATCCCCTTCCGAGAGAGCAAGCTCACCAAACTCTTCCAGGCTTTTTTCTGTGGCAAAGGACGAGCTTCAATGATCGTCAACATTAATCAGTGTGCTTCCACTTACGACGAGACTCTCCATGTTATGAAATTCTCTGCCGTTGCCAAACAGGTGGTGCAGATGATCCCAGACAAACCTCTGGTATCTCTGGCTCCCTGTCTGGTCGGTCGTGATGGCAAACCTCTGGTGAGGAATGGAATGATCGATGACCAGGCCCTGGAAAGTTACCTGTCTGAAGACGAGCTGCTTGACGAAGAGGACGAGGCCGACATGTCTCTGCTGCCACAGAATGAGCTTGTGAATATGATCGACAGCCTCCGAACAAAACTCTTGGCCGAGAGAAGAAGAAACCTGGTGCAGGAAATGGAGATTCGTAAGGAAATGGGAGATGCAATGATCCAGCAGATCATGGAGAGTGAAGAACTCCACACTCGACAGATCGAGGAGTTGAAGGAGCGCTACCAAGAAAAGCTGGAGGACACATTTGAGATGTACAAGGATGCTATCAAAGAGCACGCCTACCAGAGCGCCATGAACAACCTGGAAGATGACTATGTTCCTCTGGATGAGTTCATTGCTGAACAGGAGAAAGTAGAGGCACTAAGACGTAAGGTGTCCGAGTTGGAGATGAGAGGAGCATCTGCAGTTCCATCAGTGGACGAGTCTTGCCAGACTGAATCGCCTGAAGTACCAGAAGCAGAAGGGAACGATCGATACAAACGGCTTTACAAAGAAAAATGCGCCATCGAGATGATGTGTGAGGATAAACAACAGCTTATTTTGTCCCTAGAGAGAAGGCTGATGGAGCTTAGTGAAACACTGAAGAAGGTCAGAGATGGCTTCCTGGAGAAATCTGCTGACCTGGAGGCTCTGCAGAGGAAGTCTGATGGCGAGATTGCTGAGAAGGACCTTGAGATTGCCTCACTAAAGGCCGAAGTGGAAAAGCTCAAATCCCCTTTGCAGCCCAAGGTGAAGCGAGGTCTGCTCGCCAACATCAAGGAGGCTGTTACTTCTCCACGGAAGGGAGGGTCCGGCAGAATCCTCAGGAAAACAGTTAAGACTGTACAACACTGA___CATTTTAA

Fln Alignment:

Contig12___MSTFTDLAAEDSVY-QPEDMELTCTTPPVSPPPKQSEVNGGSEQQTMRVYLRVRPFSKDERLNDEDQDCVVIENSQMVTLNAPKGSATLKNSDK----SIHKFSFSQIFGPETSQAELYEDTVQSQMSDFLDGKNALIFSYGVTNAGKTFTIQGTQKDPGILPRVLDATFHHIGGDQYEGMDLKPYLRNDVQYLDPDQVKQERSAKAAIFASVKEEYDYLRXXXXXXXXXXXXXXXXYNQTVLTSDPTEADISQFALWVAFFEIYNECVYDLLQPSLCTKSKKRSALRVCDDGAGNAYVKDVRWINIQSLGEAYKLLQFGNKNRSAAATKMNQSSSRSHSIFSMKLLKIDRGAVKxxxxxxxxDLAGSERCNKTKTFGERLKEAGNINNSLLILGKCITALRNNQTER--IKSSYIPFRESKLTKLFQAFFCGKGRASMIVNINQCASTYDETLHVMKFSAVAKQVVQMIPDKPLVSLAPCLVGRDGKPLVRNGMIDDQAXXXXXXXXXXXXXXXXXXXXXXPQNELVNMIDSLRTKLLAERRRNLVQEMEIRKEMGDAMIQQIMESEELHTRQIEELKERYQEKLEDTFEMYKDAIKEHAYQSAMNNLEDDYVPLDEFIAEQEKVEALRRKVSELE------MRGASAVPSVDESCQTESPEVPEAEGNDRYKRLYKEKCAIEMMCEDKQQXXXXXXXXXXXXXXXXKKVRDGFLEKSADLEALQRKSDGEI----------AEKDLEIASLKAEVEKL--KSPLQPKVKRGLLANIKEAVTSPRKGGSGRILRKTVKT
E6ZI94______________MSTAIDLTNEECDHMQPVDMDLTGNAFPVRTSSQQNEMPGGAEQQTMRVYLRVRPFSKEELYDNEDQDCVVIENSQTVTLNAPKGSATMKSSEKGIGMSLHKFSFSKIFGPERTQSELFEDTVKSQMSDFLDGKNALIFSYGVTNAGKTYTIQGTPKQPGILPRVLDATFHYTGGRQYEGMDLKPYLRNDAQYLDPDQVKQERSAKAAIFASVKDSQWWFRVLDLFHLHSVILLFVLRSNPVLASDPTEAGSSQFALWVAFFEIYNECVYDLLQPSLCSKSKKRAALRVCDDGAGNAYVKDLRWINIQTLGEASKLLQFGNKNRSAAATKMNQSSSRSHSIFTMKLLKIDGSSVKxxxxxxxxDLAGSERCNKTKTFGERLKEAGNINNSLLILGKCINALRNNQTDRYRMKSSYIPFRESKLTKLFQAVFCGKGKASMIVNINQCASTYDETLHVMKFSAVAKQVVQVIPDKPLESLAPCLVGRDGKPLVRNGVIDSQALESCLSEEELLDDEDEADMSLLPQNEIVTMIESLRTKLLTERRRNLVQEMEIRKEMGDAMLQQLMESEELRSRQIEELKESYQEKLENTFEMYKDAFKEHAYQSAMNNLEDDYVPLDEFIAEQEKVEALKRKVSELETLPSSIRGGACAAPTVAQSCQTQPSKATEAAADERCKRLYKEKCAMERMCEDKQQLILSLEKRLMELNETLQYVRDGFLEKSADLETLQRKADDQTESLEDVLRQNVEKDREISSLKAELAKLSQKSPVQPKPKRGLLANLKEAVTSPRKATTARTLRKTSRT

SNPs (tot: 0)

Position	A %	C %	G %	T %	Probability
1315		25	75		1.0
1337	88		11		0.923564
1350			90	10	0.90298
1370	88		11		0.923564
1572		12		87	0.992554
1653		12		87	0.992554
1657		12		87	0.992554
1670	11	88			0.923564
1672	11			88	0.923564
1674	88			11	0.923564
1677	88			11	0.923564
1720	16			83	0.994512
1724	16	83			0.994512
2016		13		86	0.999973
2120	10		90		0.90298
2121		90		10	0.90298
2159	90		10		0.90298
2160	90		10		0.90298
2422	23		76		1.0
2443	20		80		0.999996
2449	88	11			0.923564
2462	87		12		0.992554
2479		14		85	0.993533

Curation

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